Variant report

Variant	rs66885574
Chromosome Location	chr5:167513380-167513381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167512986..167513910-chr5:167646566..167647140,2	MCF-7	breast:
2	chr5:167513289..167514132-chr5:167541216..167542021,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10053703	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10516043	0.82[EUR][1000 genomes]
rs11134487	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12055092	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12188085	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12188092	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13358864	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17051818	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17051821	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17069767	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17069814	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069822	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56114918	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56133446	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57617749	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72824985	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72824988	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9313395	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167501600-167514800	Weak transcription	NHEK	skin
2	chr5:167505200-167515400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:167511200-167514000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:167511200-167514200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:167511400-167514200	Enhancers	Fetal Lung	lung
6	chr5:167511600-167513800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167511600-167514000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167511600-167514000	Enhancers	Fetal Muscle Leg	muscle
9	chr5:167511600-167514200	Enhancers	Left Ventricle	heart
10	chr5:167511800-167514000	Enhancers	Fetal Stomach	stomach
11	chr5:167511800-167514000	Enhancers	HSMMtube	muscle
12	chr5:167511800-167514200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:167511800-167514200	Enhancers	Colon Smooth Muscle	Colon
14	chr5:167512000-167513800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:167512000-167514000	Enhancers	Osteobl	bone
16	chr5:167512000-167514400	Enhancers	Rectal Smooth Muscle	rectum
17	chr5:167512200-167513400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr5:167512200-167514000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr5:167512400-167513600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:167512400-167513800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr5:167512400-167514000	Enhancers	Fetal Muscle Trunk	muscle
22	chr5:167512400-167514000	Enhancers	Lung	lung
23	chr5:167512400-167514200	Enhancers	Ovary	ovary
24	chr5:167512600-167513400	Flanking Active TSS	HSMM	muscle
25	chr5:167512600-167513600	Weak transcription	Adipose Nuclei	Adipose
26	chr5:167512600-167513800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr5:167512600-167513800	Enhancers	Right Ventricle	heart
28	chr5:167512600-167514000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:167512800-167513400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:167512800-167513600	Enhancers	Placenta Amnion	Placenta Amnion
31	chr5:167512800-167513800	Enhancers	Brain Cingulate Gyrus	brain
32	chr5:167512800-167513800	Flanking Active TSS	Hela-S3	cervix
33	chr5:167512800-167513800	Enhancers	NHDF-Ad	bronchial
34	chr5:167512800-167514200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr5:167512800-167514200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr5:167513000-167513400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:167513000-167513400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr5:167513000-167513600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:167513000-167513800	Flanking Active TSS	A549	lung
40	chr5:167513000-167514000	Enhancers	Colonic Mucosa	Colon
41	chr5:167513000-167514000	Weak transcription	Fetal Brain Male	brain
42	chr5:167513000-167514200	Enhancers	Rectal Mucosa Donor 29	rectum
43	chr5:167513000-167514200	Enhancers	Right Atrium	heart
44	chr5:167513000-167517400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr5:167513200-167513400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
46	chr5:167513200-167513400	Active TSS	Stomach Smooth Muscle	stomach
47	chr5:167513200-167513400	Enhancers	NH-A	brain
48	chr5:167513200-167513600	Weak transcription	Fetal Brain Female	brain
49	chr5:167513200-167513800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr5:167513200-167513800	Bivalent Enhancer	Fetal Intestine Large	intestine

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