Variant report

Variant	rs10516043
Chromosome Location	chr5:167486328-167486329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10053703	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11134487	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12055092	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188085	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12188092	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13358864	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17051818	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17051821	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17069767	0.83[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17069814	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs17069822	1.00[CHB][hapmap]
rs34118922	0.89[ASN][1000 genomes]
rs35613923	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs56114918	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56133446	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57617749	0.81[AMR][1000 genomes]
rs66885574	0.82[EUR][1000 genomes]
rs72824985	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72824988	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7732210	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[ASN][1000 genomes]
rs9313395	1.00[ASW][hapmap];0.91[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167468000-167500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167474600-167491400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:167475000-167491800	Weak transcription	NH-A	brain
4	chr5:167475400-167489200	Weak transcription	HSMM	muscle
5	chr5:167477800-167489200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr5:167478000-167489000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:167483200-167489400	Weak transcription	Left Ventricle	heart
8	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
9	chr5:167485000-167488400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr5:167485600-167488800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:167485600-167489200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:167485800-167488600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:167486000-167486400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:167486000-167488600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:167486000-167489200	Weak transcription	NHEK	skin
16	chr5:167486200-167489000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links