Variant report

Variant	rs17069822
Chromosome Location	chr5:167520510-167520511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10053703	0.90[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap]
rs10516043	1.00[CHB][hapmap]
rs11134487	0.80[AMR][1000 genomes]
rs12055092	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs12188085	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs12188092	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs13358864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17051818	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17051821	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17069767	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs17069814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2053048	0.80[ASN][1000 genomes]
rs2337119	0.85[YRI][hapmap]
rs2617971	0.83[YRI][hapmap]
rs2878892	0.81[ASN][1000 genomes]
rs56114918	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57617749	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66885574	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72824988	0.80[AMR][1000 genomes]
rs7730804	0.85[YRI][hapmap]
rs7732210	1.00[CHB][hapmap]
rs9313395	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167513800-167536000	Weak transcription	NHDF-Ad	bronchial
2	chr5:167514000-167531200	Weak transcription	HSMMtube	muscle
3	chr5:167514200-167524400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167514200-167531400	Weak transcription	HSMM	muscle
5	chr5:167516200-167538400	Weak transcription	HMEC	breast
6	chr5:167516600-167532000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:167517400-167522400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:167517400-167529200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:167517400-167539400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:167517600-167521800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:167517600-167523000	Strong transcription	NHEK	skin
12	chr5:167519200-167534800	Weak transcription	Esophagus	oesophagus
13	chr5:167519400-167521800	Enhancers	Hela-S3	cervix
14	chr5:167519600-167521400	Enhancers	Adipose Nuclei	Adipose
15	chr5:167519800-167520800	Enhancers	Osteobl	bone
16	chr5:167519800-167521200	Enhancers	Fetal Kidney	kidney
17	chr5:167519800-167522000	Enhancers	Ovary	ovary
18	chr5:167520000-167520600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:167520000-167521200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:167520000-167521600	Enhancers	Fetal Lung	lung
21	chr5:167520000-167524800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:167520200-167521200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:167520200-167521200	Weak transcription	Right Ventricle	heart
24	chr5:167520400-167520600	Enhancers	Fetal Heart	heart
25	chr5:167520400-167521000	Weak transcription	Left Ventricle	heart
26	chr5:167520400-167521200	Enhancers	Muscle Satellite Cultured Cells	--

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