Variant report

Variant	rs13358864
Chromosome Location	chr5:167500460-167500461
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10053703	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10516043	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11134487	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12055092	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188085	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12188092	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17051818	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17051821	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069767	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17069814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17069822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2337119	0.85[YRI][hapmap]
rs2617971	0.83[YRI][hapmap]
rs34118922	0.89[ASN][1000 genomes]
rs35613923	0.92[ASN][1000 genomes]
rs56114918	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56133446	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57617749	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66885574	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72824985	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72824988	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7730804	0.85[YRI][hapmap]
rs7732210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9313395	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Uric acid levels	22229870	GWAS catalog

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167468000-167500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
3	chr5:167491800-167500600	Weak transcription	HSMM	muscle
4	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167492000-167500600	Weak transcription	NH-A	brain
6	chr5:167495400-167500800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:167495400-167500800	Weak transcription	Right Ventricle	heart
8	chr5:167497800-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:167498600-167501600	Strong transcription	NHEK	skin
10	chr5:167499000-167500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:167499000-167502600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:167499800-167500800	Enhancers	Left Ventricle	heart
13	chr5:167500000-167500800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:167500000-167500800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:167500000-167501000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr5:167500400-167500600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:167500400-167501000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:167500400-167501000	Enhancers	Primary hematopoietic stem cells	blood
19	chr5:167500400-167501800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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