Variant report

Variant	rs12188092
Chromosome Location	chr5:167499048-167499049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:167493297..167494907-chr5:167498084..167500428,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10053703	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10516043	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11134487	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12055092	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12188085	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13358864	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17051818	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17051821	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17069767	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17069814	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs17069822	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs34118922	0.91[ASN][1000 genomes]
rs35613923	0.92[ASN][1000 genomes]
rs56114918	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56133446	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57617749	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66885574	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72824985	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72824988	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7732210	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9313395	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167468000-167500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:167483200-167502400	Weak transcription	Fetal Heart	heart
3	chr5:167491800-167500600	Weak transcription	HSMM	muscle
4	chr5:167491800-167509200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:167492000-167500600	Weak transcription	NH-A	brain
6	chr5:167495000-167499800	Weak transcription	Left Ventricle	heart
7	chr5:167495400-167499800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:167495400-167500800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:167495400-167500800	Weak transcription	Right Ventricle	heart
10	chr5:167497800-167504400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr5:167498600-167501600	Strong transcription	NHEK	skin
12	chr5:167499000-167500400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:167499000-167500800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr5:167499000-167502600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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