Variant report

Variant	rs17069814
Chromosome Location	chr5:167515503-167515504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10053703	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap]
rs10516043	1.00[ASW][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap]
rs11134487	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12055092	0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs12188085	0.82[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs12188092	0.81[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs13358864	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs17051818	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs17051821	0.82[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17069703	0.86[MEX][hapmap]
rs17069767	0.91[CEU][hapmap];0.93[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes]
rs17069822	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2053048	0.81[ASN][1000 genomes]
rs2337119	0.85[YRI][hapmap]
rs2617971	0.82[YRI][hapmap]
rs2878892	0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs56114918	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56133446	0.81[EUR][1000 genomes]
rs57617749	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66885574	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72824988	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7730804	0.85[YRI][hapmap]
rs7732210	1.00[CHB][hapmap];0.89[CHD][hapmap];0.81[JPT][hapmap]
rs9313395	1.00[ASW][hapmap];0.82[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167513000-167517400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:167513400-167520200	Weak transcription	NH-A	brain
3	chr5:167513800-167515600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:167513800-167515600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:167513800-167519800	Weak transcription	Right Ventricle	heart
6	chr5:167513800-167536000	Weak transcription	NHDF-Ad	bronchial
7	chr5:167514000-167515600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:167514000-167517600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:167514000-167531200	Weak transcription	HSMMtube	muscle
10	chr5:167514200-167515600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:167514200-167516600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:167514200-167517400	Weak transcription	Left Ventricle	heart
13	chr5:167514200-167524400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:167514200-167531400	Weak transcription	HSMM	muscle
15	chr5:167514800-167516000	Strong transcription	NHEK	skin
16	chr5:167515200-167516400	Enhancers	Adipose Nuclei	Adipose
17	chr5:167515200-167516400	Flanking Active TSS	Hela-S3	cervix
18	chr5:167515400-167516400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:167515400-167516400	Enhancers	Osteobl	bone

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