Variant report

Variant	rs56267944
Chromosome Location	chr6:30251943-30251944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11961294	0.85[ASN][1000 genomes]
rs11970259	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1264579	0.86[AFR][1000 genomes]
rs17188268	0.85[ASN][1000 genomes]
rs17195173	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3094060	0.85[ASN][1000 genomes]
rs3094061	0.85[ASN][1000 genomes]
rs3094627	0.85[ASN][1000 genomes]
rs3130374	0.85[ASN][1000 genomes]
rs3130375	0.85[ASN][1000 genomes]
rs3132649	0.85[ASN][1000 genomes]
rs56794784	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58065720	0.85[ASN][1000 genomes]
rs59152891	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59979159	0.85[ASN][1000 genomes]
rs61389055	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425422	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73425423	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425443	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73427516	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427550	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427555	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73726125	0.85[ASN][1000 genomes]
rs7770049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884062	chr6:30237454-30256838	ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30247400-30253000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:30247600-30262400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:30248400-30253400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:30248400-30255600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:30248600-30254000	ZNF genes & repeats	Liver	Liver
6	chr6:30250400-30252600	ZNF genes & repeats	Adipose Nuclei	Adipose
7	chr6:30250600-30252200	ZNF genes & repeats	Fetal Brain Female	brain
8	chr6:30250600-30252800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr6:30251200-30252000	ZNF genes & repeats	Aorta	Aorta
10	chr6:30251200-30252400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
11	chr6:30251200-30252400	ZNF genes & repeats	Brain Anterior Caudate	brain
12	chr6:30251200-30252600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
13	chr6:30251200-30253000	ZNF genes & repeats	Brain Hippocampus Middle	brain
14	chr6:30251400-30252400	ZNF genes & repeats	Brain Angular Gyrus	brain
15	chr6:30251600-30252000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:30251600-30252000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:30251600-30252800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr6:30251800-30252000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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