Variant report

Variant	rs73726125
Chromosome Location	chr6:30184180-30184181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30178310..30184484-chr6:30311860..30320436,13	MCF-7	breast:
2	chr6:30182391..30184727-chr6:30190494..30193163,2	MCF-7	breast:
3	chr6:30172695..30175243-chr6:30183856..30185988,2	K562	blood:
4	chr6:30182145..30184666-chr6:30223310..30225294,2	MCF-7	breast:
5	chr6:30182772..30184809-chr6:30214077..30216863,2	K562	blood:
6	chr6:30068684..30075353-chr6:30179679..30184952,7	MCF-7	breast:
7	chr6:30178635..30184988-chr6:30292357..30296104,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231074	Chromatin interaction
ENSG00000270604	Chromatin interaction
ENSG00000224372	Chromatin interaction
ENSG00000204616	Chromatin interaction
ENSG00000231226	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000241370	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11961294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11970259	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17188127	0.84[ASN][1000 genomes]
rs17188268	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3094060	1.00[ASN][1000 genomes]
rs3094061	1.00[ASN][1000 genomes]
rs3094627	1.00[ASN][1000 genomes]
rs3130374	1.00[ASN][1000 genomes]
rs3130375	1.00[ASN][1000 genomes]
rs3132649	1.00[ASN][1000 genomes]
rs56267944	0.85[ASN][1000 genomes]
rs56794784	0.85[ASN][1000 genomes]
rs58065720	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59152891	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59378373	0.84[ASN][1000 genomes]
rs59979159	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61389055	0.85[ASN][1000 genomes]
rs6915913	0.85[ASN][1000 genomes]
rs73425422	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73425423	0.85[ASN][1000 genomes]
rs73425443	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73426399	0.84[ASN][1000 genomes]
rs73427516	0.85[ASN][1000 genomes]
rs73427550	0.85[ASN][1000 genomes]
rs73427555	0.85[ASN][1000 genomes]
rs7770049	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30182600-30184400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:30182600-30184600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:30182600-30185600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:30182600-30186800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:30182600-30187000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:30182600-30187000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:30182600-30187000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:30182600-30187000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:30182600-30187000	Weak transcription	Fetal Thymus	thymus
10	chr6:30182600-30187200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:30182600-30187200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:30182600-30187200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:30182600-30187200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:30182600-30187200	Weak transcription	Adipose Nuclei	Adipose
15	chr6:30182600-30187200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:30182600-30187200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:30182600-30187200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:30182600-30187200	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:30182600-30187200	Weak transcription	Stomach Mucosa	stomach
20	chr6:30182600-30189200	Weak transcription	Right Atrium	heart
21	chr6:30182800-30184200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:30182800-30184600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:30182800-30186400	Weak transcription	HepG2	liver
24	chr6:30182800-30186800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr6:30182800-30186800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:30182800-30186800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:30182800-30187000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr6:30182800-30187000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr6:30182800-30187200	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr6:30182800-30187200	Weak transcription	Fetal Intestine Large	intestine
31	chr6:30182800-30187200	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:30183200-30186600	Weak transcription	Liver	Liver
33	chr6:30183200-30187000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:30183800-30184600	Enhancers	HSMMtube	muscle
35	chr6:30184000-30184400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:30184000-30184600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:30184000-30184600	Enhancers	Primary B cells from peripheral blood	blood

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