Variant report
| Variant | rs59979159 |
|---|---|
| Chromosome Location | chr6:30201057-30201058 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:30200513..30202643-chr6:30293738..30295917,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231074 | Chromatin interaction |
| ENSG00000270604 | Chromatin interaction |
| ENSG00000204599 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11961294 | 1.00[ASN][1000 genomes] |
| rs11970259 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17188127 | 0.84[ASN][1000 genomes] |
| rs17188268 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3094060 | 1.00[ASN][1000 genomes] |
| rs3094061 | 1.00[ASN][1000 genomes] |
| rs3094627 | 1.00[ASN][1000 genomes] |
| rs3130374 | 1.00[ASN][1000 genomes] |
| rs3130375 | 1.00[ASN][1000 genomes] |
| rs3132649 | 1.00[ASN][1000 genomes] |
| rs56267944 | 0.85[ASN][1000 genomes] |
| rs56794784 | 0.85[ASN][1000 genomes] |
| rs58065720 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59152891 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59378373 | 0.84[ASN][1000 genomes] |
| rs61389055 | 0.85[ASN][1000 genomes] |
| rs6915913 | 0.85[ASN][1000 genomes] |
| rs73425422 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73425423 | 0.85[ASN][1000 genomes] |
| rs73425443 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73426399 | 0.84[ASN][1000 genomes] |
| rs73427516 | 0.85[ASN][1000 genomes] |
| rs73427550 | 0.85[ASN][1000 genomes] |
| rs73427555 | 0.85[ASN][1000 genomes] |
| rs73726125 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7770049 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv884058 | chr6:30182395-30202429 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv884060 | chr6:30190640-30203602 | Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:30199600-30201600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr6:30200000-30201400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
