Variant report

Variant	rs59152891
Chromosome Location	chr6:30269923-30269924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30267234..30270116-chr6:30270396..30272673,2	K562	blood:
2	chr6:30269676..30271755-chr6:30273932..30276095,3	K562	blood:
3	chr6:30253591..30255110-chr6:30268518..30271237,2	K562	blood:
4	chr6:30269685..30271838-chr6:30361381..30363519,2	K562	blood:
5	chr6:30265083..30267008-chr6:30268532..30270496,2	K562	blood:
6	chr6:30268695..30274088-chr6:30293337..30295867,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM26-2	chr6:30268551-30271892	ENSG00000231074.4

No data

Variant related genes	Relation type
ENSG00000270604	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11961294	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11970259	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1264579	0.90[AFR][1000 genomes]
rs17188127	0.84[ASN][1000 genomes]
rs17188268	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17195173	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3094060	1.00[ASN][1000 genomes]
rs3094061	1.00[ASN][1000 genomes]
rs3094627	1.00[ASN][1000 genomes]
rs3130374	1.00[ASN][1000 genomes]
rs3130375	1.00[ASN][1000 genomes]
rs3132649	1.00[ASN][1000 genomes]
rs56267944	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56794784	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58065720	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59378373	0.84[ASN][1000 genomes]
rs59979159	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61389055	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6915913	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73425422	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425423	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73425443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73426399	0.84[ASN][1000 genomes]
rs73427516	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73427550	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73427555	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73726125	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73726808	0.91[AFR][1000 genomes]
rs7770049	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30256000-30270200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
3	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
4	chr6:30259000-30287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:30261800-30270000	Weak transcription	NHDF-Ad	bronchial
6	chr6:30262200-30270200	Weak transcription	Fetal Brain Male	brain
7	chr6:30262600-30270200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:30262600-30270200	Weak transcription	Colonic Mucosa	Colon
9	chr6:30262600-30270200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:30262600-30270400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:30262600-30271800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:30262600-30271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:30262600-30279200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:30262600-30279600	Weak transcription	Small Intestine	intestine
15	chr6:30262600-30292400	Weak transcription	Pancreas	Pancrea
16	chr6:30262800-30280200	Weak transcription	HUVEC	blood vessel
17	chr6:30262800-30280400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr6:30262800-30283200	Weak transcription	NHLF	lung
19	chr6:30262800-30290200	Weak transcription	Spleen	Spleen
20	chr6:30263000-30270200	Weak transcription	Fetal Lung	lung
21	chr6:30263000-30271400	Weak transcription	Osteobl	bone
22	chr6:30263000-30277200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr6:30263000-30280000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:30263000-30281400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:30263000-30282000	Weak transcription	Psoas Muscle	Psoas
26	chr6:30263000-30293000	Weak transcription	Brain Substantia Nigra	brain
27	chr6:30263200-30270200	Weak transcription	Esophagus	oesophagus
28	chr6:30263200-30271600	Weak transcription	Thymus	Thymus
29	chr6:30263200-30280200	Weak transcription	HSMMtube	muscle
30	chr6:30263200-30280600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr6:30263200-30281600	Weak transcription	Right Ventricle	heart
32	chr6:30263400-30270200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:30263400-30270200	Weak transcription	Left Ventricle	heart
34	chr6:30263600-30270000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr6:30263600-30270200	Weak transcription	HMEC	breast
36	chr6:30263800-30270200	Weak transcription	GM12878-XiMat	blood
37	chr6:30263800-30271800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:30263800-30280800	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:30264000-30270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:30264000-30270200	Weak transcription	Brain Anterior Caudate	brain
41	chr6:30264000-30270400	Weak transcription	Placenta	Placenta
42	chr6:30264000-30271800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:30264000-30280800	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr6:30264200-30270000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:30264200-30270000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr6:30264200-30270200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:30264200-30270200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr6:30264200-30270200	Weak transcription	Aorta	Aorta
49	chr6:30264200-30270200	Weak transcription	Lung	lung
50	chr6:30264200-30270200	Weak transcription	Ovary	ovary

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