Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11961294	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11970259	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188127	0.84[ASN][1000 genomes]
rs3094060	1.00[ASN][1000 genomes]
rs3094061	1.00[ASN][1000 genomes]
rs3094627	1.00[ASN][1000 genomes]
rs3130374	1.00[ASN][1000 genomes]
rs3130375	1.00[ASN][1000 genomes]
rs3132649	1.00[ASN][1000 genomes]
rs56267944	0.85[ASN][1000 genomes]
rs56794784	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58065720	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59152891	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59378373	0.84[ASN][1000 genomes]
rs59979159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61389055	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6915913	0.85[ASN][1000 genomes]
rs73425422	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425423	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73425443	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73426399	0.84[ASN][1000 genomes]
rs73427516	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs73427550	0.85[ASN][1000 genomes]
rs73427555	0.85[ASN][1000 genomes]
rs73726125	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770049	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884058	chr6:30182395-30202429	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv884060	chr6:30190640-30203602	Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30197800-30200000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:30198000-30199600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:30198200-30199800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:30198400-30199800	Enhancers	HSMMtube	muscle
5	chr6:30198800-30199400	Enhancers	HSMM	muscle
6	chr6:30199200-30199600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin

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