Variant report

Variant	rs7770049
Chromosome Location	chr6:30270270-30270271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30258650..30265091-chr6:30270138..30274799,6	MCF-7	breast:
2	chr6:30269676..30271755-chr6:30273932..30276095,3	K562	blood:
3	chr6:30253591..30255110-chr6:30268518..30271237,2	K562	blood:
4	chr6:30269685..30271838-chr6:30361381..30363519,2	K562	blood:
5	chr6:30265083..30267008-chr6:30268532..30270496,2	K562	blood:
6	chr6:30268695..30274088-chr6:30293337..30295867,6	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM26-2	chr6:30268551-30271892	ENSG00000231074.4

No data

Variant related genes	Relation type
ENSG00000270604	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11961294	0.85[ASN][1000 genomes]
rs11970259	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1264579	0.94[AFR][1000 genomes]
rs17188268	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17195173	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3094060	0.85[ASN][1000 genomes]
rs3094061	0.85[ASN][1000 genomes]
rs3094627	0.85[ASN][1000 genomes]
rs3130374	0.85[ASN][1000 genomes]
rs3130375	0.85[ASN][1000 genomes]
rs3132649	0.85[ASN][1000 genomes]
rs56267944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56794784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58065720	0.85[ASN][1000 genomes]
rs59152891	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59979159	0.85[ASN][1000 genomes]
rs61389055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915913	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425422	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73425423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425443	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73427516	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427550	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73726125	0.85[ASN][1000 genomes]
rs73726808	0.87[AFR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
2	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
3	chr6:30259000-30287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:30262600-30270400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:30262600-30271800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:30262600-30271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:30262600-30279200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:30262600-30279600	Weak transcription	Small Intestine	intestine
9	chr6:30262600-30292400	Weak transcription	Pancreas	Pancrea
10	chr6:30262800-30280200	Weak transcription	HUVEC	blood vessel
11	chr6:30262800-30280400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:30262800-30283200	Weak transcription	NHLF	lung
13	chr6:30262800-30290200	Weak transcription	Spleen	Spleen
14	chr6:30263000-30271400	Weak transcription	Osteobl	bone
15	chr6:30263000-30277200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr6:30263000-30280000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:30263000-30281400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:30263000-30282000	Weak transcription	Psoas Muscle	Psoas
19	chr6:30263000-30293000	Weak transcription	Brain Substantia Nigra	brain
20	chr6:30263200-30271600	Weak transcription	Thymus	Thymus
21	chr6:30263200-30280200	Weak transcription	HSMMtube	muscle
22	chr6:30263200-30280600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:30263200-30281600	Weak transcription	Right Ventricle	heart
24	chr6:30263800-30271800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:30263800-30280800	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:30264000-30270400	Weak transcription	Placenta	Placenta
27	chr6:30264000-30271800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:30264000-30280800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:30264200-30280200	Weak transcription	NH-A	brain
30	chr6:30264200-30286600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:30264200-30289800	Weak transcription	Gastric	stomach
32	chr6:30264400-30272200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:30264400-30285200	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:30266000-30272400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:30266000-30275400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:30267400-30273400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
37	chr6:30267600-30273200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
38	chr6:30268200-30277800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
39	chr6:30268400-30272200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
40	chr6:30268400-30273000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr6:30268400-30273000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:30268400-30273200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
43	chr6:30268600-30273000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:30268600-30278200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:30268600-30278600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:30268800-30271000	ZNF genes & repeats	Brain Germinal Matrix	brain
47	chr6:30268800-30271400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
48	chr6:30268800-30271400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
49	chr6:30268800-30272400	ZNF genes & repeats	Fetal Intestine Small	intestine
50	chr6:30269000-30270400	Strong transcription	Primary T cells from cord blood	blood

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