Variant report

Variant	rs61389055
Chromosome Location	chr6:30264937-30264938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30264770-30264994	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr6:30264799-30265433	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr6:30264729-30265062	K562	blood:	n/a	n/a
4	POLR2A	chr6:30264685-30265033	K562	blood:	n/a	n/a
5	POLR2A	chr6:30264830-30264986	Hela-S3	cervix:	n/a	n/a
6	MAX	chr6:30264870-30265135	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30261501..30265546-chr6:30310228..30314438,4	K562	blood:
2	chr6:30258650..30265091-chr6:30270138..30274799,6	MCF-7	breast:
3	chr6:30263540..30265858-chr6:30292357..30294554,2	MCF-7	breast:

No data

Variant related genes	Relation type
HCG18	TF binding region
ENSG00000204599	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000241370	Chromatin interaction
ENSG00000270604	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11961294	0.85[ASN][1000 genomes]
rs11970259	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1264579	0.94[AFR][1000 genomes]
rs17188268	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17195173	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3094060	0.85[ASN][1000 genomes]
rs3094061	0.85[ASN][1000 genomes]
rs3094627	0.85[ASN][1000 genomes]
rs3130374	0.85[ASN][1000 genomes]
rs3130375	0.85[ASN][1000 genomes]
rs3132649	0.85[ASN][1000 genomes]
rs56267944	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56794784	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58065720	0.85[ASN][1000 genomes]
rs59152891	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59979159	0.85[ASN][1000 genomes]
rs6915913	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425422	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73425423	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425443	0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73427516	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427550	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73427555	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73726125	0.85[ASN][1000 genomes]
rs73726808	0.87[AFR][1000 genomes]
rs7770049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30256000-30270200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:30256200-30292000	Weak transcription	Fetal Heart	heart
3	chr6:30257600-30292800	Weak transcription	Fetal Kidney	kidney
4	chr6:30258400-30265000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:30259000-30265200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:30259000-30287200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:30260200-30265000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:30261800-30270000	Weak transcription	NHDF-Ad	bronchial
9	chr6:30262200-30270200	Weak transcription	Fetal Brain Male	brain
10	chr6:30262600-30269200	Weak transcription	Hela-S3	cervix
11	chr6:30262600-30270200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:30262600-30270200	Weak transcription	Colonic Mucosa	Colon
13	chr6:30262600-30270200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:30262600-30270400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:30262600-30271800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr6:30262600-30271800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr6:30262600-30279200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:30262600-30279600	Weak transcription	Small Intestine	intestine
19	chr6:30262600-30292400	Weak transcription	Pancreas	Pancrea
20	chr6:30262800-30269400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:30262800-30280200	Weak transcription	HUVEC	blood vessel
22	chr6:30262800-30280400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:30262800-30283200	Weak transcription	NHLF	lung
24	chr6:30262800-30290200	Weak transcription	Spleen	Spleen
25	chr6:30263000-30265200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:30263000-30269000	Weak transcription	HSMM	muscle
27	chr6:30263000-30270200	Weak transcription	Fetal Lung	lung
28	chr6:30263000-30271400	Weak transcription	Osteobl	bone
29	chr6:30263000-30277200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:30263000-30280000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:30263000-30281400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:30263000-30282000	Weak transcription	Psoas Muscle	Psoas
33	chr6:30263000-30293000	Weak transcription	Brain Substantia Nigra	brain
34	chr6:30263200-30268800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:30263200-30268800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr6:30263200-30269800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:30263200-30270200	Weak transcription	Esophagus	oesophagus
38	chr6:30263200-30271600	Weak transcription	Thymus	Thymus
39	chr6:30263200-30280200	Weak transcription	HSMMtube	muscle
40	chr6:30263200-30280600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:30263200-30281600	Weak transcription	Right Ventricle	heart
42	chr6:30263400-30266600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr6:30263400-30270200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr6:30263400-30270200	Weak transcription	Left Ventricle	heart
45	chr6:30263600-30268800	Weak transcription	Brain Germinal Matrix	brain
46	chr6:30263600-30270000	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr6:30263600-30270200	Weak transcription	HMEC	breast
48	chr6:30263800-30265600	Weak transcription	Fetal Intestine Large	intestine
49	chr6:30263800-30269000	Weak transcription	Primary B cells from cord blood	blood
50	chr6:30263800-30269400	Weak transcription	A549	lung

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