Variant report

Variant rs56328890
Chromosome Location chr19:53341314-53341315
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:69 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53333600-53345000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr19:53335000-53342800 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr19:53337600-53342200 Weak transcription Brain Germinal Matrix brain
4 chr19:53337600-53342200 Weak transcription Fetal Stomach stomach
5 chr19:53337800-53341400 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr19:53337800-53342200 Weak transcription H9 Cell Line embryonic stem cell
7 chr19:53337800-53342400 Weak transcription Right Ventricle heart
8 chr19:53338000-53341400 Weak transcription HUES64 Cell Line embryonic stem cell
9 chr19:53338000-53342400 Weak transcription H1 Cell Line embryonic stem cell
10 chr19:53338000-53342600 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr19:53338000-53343400 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr19:53338200-53341400 Weak transcription iPS-20b Cell Line embryonic stem cell
13 chr19:53338200-53342600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr19:53338800-53342200 Weak transcription Fetal Muscle Trunk muscle
15 chr19:53338800-53342600 Weak transcription Brain Substantia Nigra brain
16 chr19:53338800-53349200 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr19:53338800-53352000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr19:53338800-53355000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr19:53339000-53342400 Weak transcription Fetal Muscle Leg muscle
20 chr19:53339000-53345800 Strong transcription Placenta Placenta
21 chr19:53339000-53357600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr19:53339000-53357800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
23 chr19:53339000-53359200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
24 chr19:53339200-53350600 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
25 chr19:53339400-53348200 ZNF genes & repeats Adipose Nuclei Adipose
26 chr19:53339600-53342400 Weak transcription Psoas Muscle Psoas
27 chr19:53339600-53342600 Weak transcription Stomach Smooth Muscle stomach
28 chr19:53339600-53348600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
29 chr19:53339600-53351600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
30 chr19:53340400-53350200 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr19:53340600-53341800 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
32 chr19:53340600-53348000 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
33 chr19:53340600-53348400 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr19:53340600-53349200 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
35 chr19:53340600-53349800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
36 chr19:53340600-53350200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr19:53340600-53355000 ZNF genes & repeats Duodenum Mucosa Duodenum
38 chr19:53340800-53341600 ZNF genes & repeats Brain Hippocampus Middle brain
39 chr19:53340800-53341800 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
40 chr19:53340800-53342400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr19:53340800-53342600 Weak transcription Fetal Kidney kidney
42 chr19:53340800-53344200 Strong transcription Ovary ovary
43 chr19:53340800-53347800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
44 chr19:53340800-53348000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
45 chr19:53340800-53349800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr19:53340800-53350400 Strong transcription Dnd41 blood
47 chr19:53340800-53352000 Strong transcription Fetal Brain Female brain
48 chr19:53340800-53355000 ZNF genes & repeats Primary hematopoietic stem cells blood
49 chr19:53340800-53355000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr19:53340800-53357400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin

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