Variant report

Variant	rs56695052
Chromosome Location	chr11:76792295-76792296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76785280..76787999-chr11:76789293..76793617,3	MCF-7	breast:
2	chr11:76782460..76786842-chr11:76790221..76793503,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10899348	0.91[ASN][1000 genomes]
rs11237065	0.86[ASN][1000 genomes]
rs11600516	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11602496	0.90[ASN][1000 genomes]
rs11603853	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11607153	0.90[ASN][1000 genomes]
rs12362167	0.88[ASN][1000 genomes]
rs12422079	0.87[ASN][1000 genomes]
rs12789749	0.90[ASN][1000 genomes]
rs12794060	0.90[ASN][1000 genomes]
rs58520141	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61617479	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61902094	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61902097	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61902099	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61902104	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72931522	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7482827	0.90[ASN][1000 genomes]
rs7949146	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76778600-76818800	Weak transcription	Aorta	Aorta
2	chr11:76781200-76794200	Weak transcription	Fetal Brain Female	brain
3	chr11:76784000-76793000	Weak transcription	Primary T cells from cord blood	blood
4	chr11:76784800-76793200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:76785200-76792400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:76785600-76793200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:76785800-76794200	Weak transcription	Small Intestine	intestine
8	chr11:76786000-76792800	Weak transcription	Right Ventricle	heart
9	chr11:76786000-76793400	Weak transcription	Pancreas	Pancrea
10	chr11:76786200-76799000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:76786600-76792600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:76786600-76793400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:76786800-76792600	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:76786800-76793600	Weak transcription	Fetal Lung	lung
15	chr11:76787200-76793400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:76789200-76796600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:76789400-76794000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:76790000-76792400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:76790200-76793400	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr11:76790800-76804600	Enhancers	Liver	Liver
21	chr11:76791200-76792800	Genic enhancers	Rectal Mucosa Donor 29	rectum
22	chr11:76791200-76797000	Enhancers	Stomach Mucosa	stomach
23	chr11:76791400-76792400	Strong transcription	Fetal Intestine Small	intestine
24	chr11:76791400-76792400	Enhancers	Spleen	Spleen
25	chr11:76791400-76792600	Enhancers	NHDF-Ad	bronchial
26	chr11:76791400-76792600	Enhancers	NHLF	lung
27	chr11:76791400-76793200	Strong transcription	Fetal Stomach	stomach
28	chr11:76791400-76793600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr11:76791400-76795000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:76791400-76795600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:76791400-76795800	Genic enhancers	Gastric	stomach
32	chr11:76791400-76796600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr11:76791600-76792400	Enhancers	NH-A	brain
34	chr11:76791600-76792600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:76791600-76793000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr11:76791600-76793800	Weak transcription	Brain Germinal Matrix	brain
37	chr11:76791600-76794400	Enhancers	HSMM	muscle
38	chr11:76791600-76794600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:76791600-76794800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:76791800-76792400	Weak transcription	Colonic Mucosa	Colon
41	chr11:76791800-76792600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:76791800-76792600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:76791800-76794400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr11:76791800-76797800	Genic enhancers	Fetal Intestine Large	intestine
45	chr11:76792000-76792400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:76792000-76792400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
47	chr11:76792000-76793200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:76792000-76793200	Enhancers	Duodenum Mucosa	Duodenum
49	chr11:76792000-76793600	Weak transcription	GM12878-XiMat	blood
50	chr11:76792000-76794600	Enhancers	Cortex derived primary cultured neurospheres	brain

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