Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:76768870..76771269-chr11:76778034..76779779,2	MCF-7	breast:
2	chr11:76770876..76772390-chr11:76776202..76777772,2	MCF-7	breast:
3	chr11:76766352..76769639-chr11:76770714..76773550,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149260	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10899348	0.98[ASN][1000 genomes]
rs11237065	0.95[ASN][1000 genomes]
rs11602496	0.99[ASN][1000 genomes]
rs11603853	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11607153	0.99[ASN][1000 genomes]
rs12362167	0.97[ASN][1000 genomes]
rs12422079	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12789749	0.99[ASN][1000 genomes]
rs12794060	0.99[ASN][1000 genomes]
rs17135325	1.00[ASW][hapmap]
rs56695052	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58520141	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61617479	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61902094	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61902097	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61902099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902104	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72931522	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7482827	0.99[ASN][1000 genomes]
rs7925199	0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7949146	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11600516	UCP3	cis	cerebellum	SCAN
rs11600516	USP35	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76769600-76771600	Weak transcription	Colonic Mucosa	Colon
2	chr11:76770400-76773200	Enhancers	Liver	Liver
3	chr11:76770800-76771400	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search: