Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76747433..76752556-chr11:76753970..76757160,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198488	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899348	0.94[ASN][1000 genomes]
rs11237065	0.95[ASN][1000 genomes]
rs11600516	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11602496	0.95[ASN][1000 genomes]
rs11603853	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11607153	0.95[ASN][1000 genomes]
rs12362167	0.97[ASN][1000 genomes]
rs12422079	0.98[ASN][1000 genomes]
rs12789749	0.95[ASN][1000 genomes]
rs12794060	0.95[ASN][1000 genomes]
rs56695052	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58520141	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61617479	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902094	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902099	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61902104	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72931522	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7482827	0.95[ASN][1000 genomes]
rs7925199	0.85[ASN][1000 genomes]
rs7949146	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76750200-76756800	Weak transcription	A549	lung
2	chr11:76751400-76758200	Weak transcription	Right Atrium	heart
3	chr11:76751600-76757000	Weak transcription	Pancreas	Pancrea
4	chr11:76751800-76756200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:76752000-76758200	Weak transcription	Spleen	Spleen
6	chr11:76752200-76756400	Weak transcription	Fetal Intestine Small	intestine
7	chr11:76753600-76757000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:76754400-76756800	Weak transcription	K562	blood

Quick Search: