Variant report

Variant	rs61902104
Chromosome Location	chr11:76781788-76781789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76780791..76782820-chr11:76783280..76785749,2	MCF-7	breast:
2	chr11:76749869..76752278-chr11:76780764..76782870,2	K562	blood:

Variant related genes	Relation type
ENSG00000198488	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899348	0.93[ASN][1000 genomes]
rs11237065	0.89[ASN][1000 genomes]
rs11600516	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11602496	0.93[ASN][1000 genomes]
rs11603853	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11607153	0.93[ASN][1000 genomes]
rs12362167	0.91[ASN][1000 genomes]
rs12422079	0.90[ASN][1000 genomes]
rs12789749	0.93[ASN][1000 genomes]
rs12794060	0.93[ASN][1000 genomes]
rs56695052	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58520141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61617479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902094	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902097	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902099	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72931522	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482827	0.93[ASN][1000 genomes]
rs7925199	0.81[ASN][1000 genomes]
rs7949146	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76778600-76818800	Weak transcription	Aorta	Aorta
2	chr11:76778800-76782800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:76778800-76783200	Weak transcription	A549	lung
4	chr11:76778800-76783600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:76778800-76784000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:76779000-76781800	Enhancers	Fetal Brain Male	brain
7	chr11:76779000-76782800	Weak transcription	Pancreas	Pancrea
8	chr11:76779000-76783000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:76779000-76783000	Weak transcription	Primary T cells from cord blood	blood
10	chr11:76779000-76783000	Weak transcription	Right Atrium	heart
11	chr11:76779000-76783000	Weak transcription	NH-A	brain
12	chr11:76779000-76783200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:76779000-76783800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:76779000-76784000	Weak transcription	Fetal Heart	heart
15	chr11:76779000-76786800	Enhancers	Fetal Muscle Leg	muscle
16	chr11:76779200-76782400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr11:76779200-76782600	Weak transcription	HUVEC	blood vessel
18	chr11:76779200-76783000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:76779200-76783200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:76779200-76783200	Weak transcription	Fetal Lung	lung
21	chr11:76779200-76783400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:76779200-76783400	Weak transcription	Brain Angular Gyrus	brain
23	chr11:76779200-76783600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:76779200-76783600	Weak transcription	Fetal Kidney	kidney
25	chr11:76779400-76781800	Enhancers	Fetal Intestine Large	intestine
26	chr11:76779400-76781800	Enhancers	Gastric	stomach
27	chr11:76779400-76782400	Weak transcription	Ovary	ovary
28	chr11:76779400-76782600	Weak transcription	Brain Anterior Caudate	brain
29	chr11:76779400-76782800	Weak transcription	Lung	lung
30	chr11:76779400-76783000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:76779400-76783000	Weak transcription	Osteobl	bone
32	chr11:76779400-76783200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:76779600-76781800	Enhancers	Brain Germinal Matrix	brain
34	chr11:76779600-76783200	Weak transcription	Adipose Nuclei	Adipose
35	chr11:76779600-76784200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr11:76779800-76782200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:76779800-76782600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:76779800-76783200	Weak transcription	Colon Smooth Muscle	Colon
39	chr11:76779800-76783200	Weak transcription	Small Intestine	intestine
40	chr11:76779800-76783400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:76779800-76784600	Enhancers	Muscle Satellite Cultured Cells	--
42	chr11:76779800-76785800	Enhancers	Liver	Liver
43	chr11:76780000-76782200	Weak transcription	Esophagus	oesophagus
44	chr11:76780000-76782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:76780000-76784000	Enhancers	HSMM	muscle
46	chr11:76780200-76781800	Enhancers	Stomach Smooth Muscle	stomach
47	chr11:76780200-76782000	Enhancers	Brain Hippocampus Middle	brain
48	chr11:76780200-76782400	Weak transcription	NHLF	lung
49	chr11:76780200-76783000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:76780400-76782600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links