Variant report

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:76773945-76774593	HCT-116	colon:	n/a	n/a
2	STAT3	chr11:76774422-76774590	MCF10A-Er-Src	breast:	n/a	n/a
3	CTCF	chr11:76774420-76774570	GM12864	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76773676..76774595-chr11:76803117..76803633,2	MCF-7	breast:
2	chr11:76774133..76776109-chr11:76784274..76786020,2	MCF-7	breast:
3	chr11:76773411..76776008-chr11:76800867..76802554,2	MCF-7	breast:
4	chr11:76773520..76774669-chr11:76801931..76802903,8	MCF-7	breast:
5	chr11:76772671..76775238-chr11:76792945..76795624,2	MCF-7	breast:
6	chr11:76773374..76775409-chr11:76801353..76802865,21	MCF-7	breast:

No data

Variant related genes	Relation type
CAPN5	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899348	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11237065	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11237072	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11600516	0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11602496	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11603853	0.81[ASN][1000 genomes]
rs11607153	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12362167	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12422079	0.85[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs12789749	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12794060	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58520141	0.83[ASN][1000 genomes]
rs61617479	0.81[ASN][1000 genomes]
rs61902094	0.85[ASN][1000 genomes]
rs61902097	0.85[ASN][1000 genomes]
rs61902099	0.86[ASN][1000 genomes]
rs61902104	0.81[ASN][1000 genomes]
rs72931522	0.81[ASN][1000 genomes]
rs7482827	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7949146	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7925199	UCP3	cis	cerebellum	SCAN
rs7925199	GSTT1	trans	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76771600-76776800	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr11:76772000-76775000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:76772800-76777000	Weak transcription	Gastric	stomach
4	chr11:76773800-76777000	Enhancers	Liver	Liver
5	chr11:76774000-76777000	Enhancers	Stomach Mucosa	stomach
6	chr11:76774200-76774800	Enhancers	Duodenum Mucosa	Duodenum
7	chr11:76774200-76774800	Enhancers	A549	lung
8	chr11:76774200-76776000	Enhancers	Pancreas	Pancrea
9	chr11:76774200-76776800	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr11:76774200-76777000	Enhancers	Fetal Intestine Large	intestine
11	chr11:76774200-76777000	Enhancers	Fetal Intestine Small	intestine
12	chr11:76774400-76776000	Enhancers	Colonic Mucosa	Colon
13	chr11:76774400-76776600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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