Variant report

Variant	rs61617479
Chromosome Location	chr11:76783626-76783627
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76782460..76786842-chr11:76790221..76793503,4	K562	blood:
2	chr11:76778089..76780478-chr11:76782080..76783942,2	K562	blood:
3	chr11:76783085..76786900-chr11:76797347..76800457,4	MCF-7	breast:
4	chr11:76777344..76779483-chr11:76783281..76786012,3	K562	blood:
5	chr11:76776923..76780686-chr11:76782092..76786300,9	MCF-7	breast:
6	chr11:76780791..76782820-chr11:76783280..76785749,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149260	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899348	0.93[ASN][1000 genomes]
rs11237065	0.89[ASN][1000 genomes]
rs11600516	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11602496	0.93[ASN][1000 genomes]
rs11603853	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11607153	0.93[ASN][1000 genomes]
rs12362167	0.91[ASN][1000 genomes]
rs12422079	0.90[ASN][1000 genomes]
rs12789749	0.93[ASN][1000 genomes]
rs12794060	0.93[ASN][1000 genomes]
rs56695052	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58520141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61902094	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902097	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902099	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61902104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72931522	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482827	0.93[ASN][1000 genomes]
rs7925199	0.81[ASN][1000 genomes]
rs7949146	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76778600-76818800	Weak transcription	Aorta	Aorta
2	chr11:76778800-76784000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:76779000-76783800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:76779000-76784000	Weak transcription	Fetal Heart	heart
5	chr11:76779000-76786800	Enhancers	Fetal Muscle Leg	muscle
6	chr11:76779600-76784200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:76779800-76784600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:76779800-76785800	Enhancers	Liver	Liver
9	chr11:76780000-76784000	Enhancers	HSMM	muscle
10	chr11:76780400-76784000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:76781200-76784000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr11:76781200-76785200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:76781200-76794200	Weak transcription	Fetal Brain Female	brain
14	chr11:76781400-76784600	Enhancers	Stomach Mucosa	stomach
15	chr11:76781600-76784400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:76781600-76785600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:76781800-76784400	Weak transcription	Brain Germinal Matrix	brain
18	chr11:76781800-76785400	Weak transcription	Fetal Brain Male	brain
19	chr11:76782000-76784800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:76782200-76785000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:76782200-76785400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr11:76782200-76785800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:76782200-76786600	Genic enhancers	Fetal Intestine Small	intestine
24	chr11:76782200-76786800	Enhancers	Esophagus	oesophagus
25	chr11:76782200-76787000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:76782400-76783800	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:76782400-76785000	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr11:76782400-76785200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:76782400-76786600	Enhancers	Ovary	ovary
30	chr11:76782400-76786600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:76782400-76787600	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr11:76782600-76784000	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr11:76782600-76784600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:76782600-76784600	Enhancers	NHDF-Ad	bronchial
35	chr11:76782600-76784800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr11:76782600-76785600	Enhancers	HUVEC	blood vessel
37	chr11:76782600-76785800	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr11:76782600-76786000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr11:76782800-76784200	Flanking Active TSS	Duodenum Mucosa	Duodenum
40	chr11:76782800-76784600	Enhancers	NHLF	lung
41	chr11:76782800-76784800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:76782800-76785000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:76782800-76785200	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:76782800-76785800	Enhancers	Brain Hippocampus Middle	brain
45	chr11:76782800-76786000	Enhancers	Pancreas	Pancrea
46	chr11:76782800-76786000	Enhancers	Right Ventricle	heart
47	chr11:76782800-76786600	Genic enhancers	Fetal Stomach	stomach
48	chr11:76782800-76786600	Enhancers	Lung	lung
49	chr11:76783000-76783800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:76783000-76784000	Enhancers	Primary T cells from cord blood	blood

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