Variant report

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76758328..76760239-chr11:76761727..76763636,2	K562	blood:
2	chr11:76752146..76753826-chr11:76757166..76759625,2	MCF-7	breast:
3	chr11:76493538..76495181-chr11:76757443..76759632,2	MCF-7	breast:
4	chr11:76756966..76759838-chr11:76801726..76802961,21	MCF-7	breast:
5	chr11:76757225..76759742-chr11:76798834..76800650,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-B3GNT6-1	chr11:76759532-76759802	NONHSAT023200

No data

Variant related genes	Relation type
ENSG00000255100	Chromatin interaction
ENSG00000182704	Chromatin interaction

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10899348	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11237072	0.82[EUR][1000 genomes]
rs11600516	0.95[ASN][1000 genomes]
rs11602496	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11603853	0.86[ASN][1000 genomes]
rs11607153	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12362167	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12422079	0.94[ASN][1000 genomes]
rs12789749	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12794060	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56695052	0.86[ASN][1000 genomes]
rs58520141	0.92[ASN][1000 genomes]
rs61617479	0.89[ASN][1000 genomes]
rs61902094	0.95[ASN][1000 genomes]
rs61902097	0.95[ASN][1000 genomes]
rs61902099	0.95[ASN][1000 genomes]
rs61902104	0.89[ASN][1000 genomes]
rs72931522	0.89[ASN][1000 genomes]
rs7482827	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925199	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7949146	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76757600-76759800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:76758600-76759600	Weak transcription	Colonic Mucosa	Colon
3	chr11:76758600-76759800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:76758600-76760000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:76758600-76760400	Weak transcription	Pancreas	Pancrea
6	chr11:76758600-76764800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:76758800-76759600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:76758800-76759600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:76758800-76759600	Weak transcription	Stomach Mucosa	stomach
10	chr11:76758800-76759800	Weak transcription	Fetal Intestine Large	intestine
11	chr11:76758800-76759800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:76758800-76759800	Weak transcription	HepG2	liver
13	chr11:76758800-76760200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:76758800-76760200	Weak transcription	Liver	Liver
15	chr11:76758800-76762800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:76758800-76763200	Weak transcription	K562	blood
17	chr11:76758800-76764000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:76758800-76764200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr11:76759400-76761200	Enhancers	Rectal Mucosa Donor 31	rectum

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