Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr11:76772827-76773128	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76766352..76769639-chr11:76770714..76773550,3	MCF-7	breast:
2	chr11:76772671..76775238-chr11:76792945..76795624,2	MCF-7	breast:

Variant related genes	Relation type
CAPN5	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10899348	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11237065	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11237072	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11600516	0.99[ASN][1000 genomes]
rs11602496	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603853	0.90[ASN][1000 genomes]
rs11607153	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362167	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12422079	0.94[ASN][1000 genomes]
rs12789749	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12794060	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56695052	0.90[ASN][1000 genomes]
rs58520141	0.95[ASN][1000 genomes]
rs61617479	0.93[ASN][1000 genomes]
rs61902094	0.95[ASN][1000 genomes]
rs61902097	0.95[ASN][1000 genomes]
rs61902099	0.99[ASN][1000 genomes]
rs61902104	0.93[ASN][1000 genomes]
rs72931522	0.93[ASN][1000 genomes]
rs7482827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925199	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76770400-76773200	Enhancers	Liver	Liver
2	chr11:76771400-76774000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:76771600-76776800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr11:76771800-76773800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:76772000-76774400	Weak transcription	Colonic Mucosa	Colon
6	chr11:76772000-76775000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:76772200-76774200	Weak transcription	Fetal Intestine Large	intestine
8	chr11:76772200-76774200	Weak transcription	A549	lung
9	chr11:76772800-76774200	Weak transcription	Fetal Intestine Small	intestine
10	chr11:76772800-76774200	Weak transcription	Pancreas	Pancrea
11	chr11:76772800-76777000	Weak transcription	Gastric	stomach
12	chr11:76773000-76774200	Weak transcription	Rectal Mucosa Donor 29	rectum

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