Variant report

Variant	rs72931522
Chromosome Location	chr11:76782442-76782443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76778089..76780478-chr11:76782080..76783942,2	K562	blood:
2	chr11:76776923..76780686-chr11:76782092..76786300,9	MCF-7	breast:
3	chr11:76780791..76782820-chr11:76783280..76785749,2	MCF-7	breast:
4	chr11:76749869..76752278-chr11:76780764..76782870,2	K562	blood:

Variant related genes	Relation type
ENSG00000198488	Chromatin interaction
ENSG00000149260	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10899348	0.93[ASN][1000 genomes]
rs11237065	0.89[ASN][1000 genomes]
rs11600516	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11602496	0.93[ASN][1000 genomes]
rs11603853	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11607153	0.93[ASN][1000 genomes]
rs12362167	0.91[ASN][1000 genomes]
rs12422079	0.90[ASN][1000 genomes]
rs12789749	0.93[ASN][1000 genomes]
rs12794060	0.93[ASN][1000 genomes]
rs56695052	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58520141	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61617479	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61902094	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902097	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61902099	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61902104	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7482827	0.93[ASN][1000 genomes]
rs7925199	0.81[ASN][1000 genomes]
rs7949146	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1816632	chr11:76751285-76927014	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76778600-76818800	Weak transcription	Aorta	Aorta
2	chr11:76778800-76782800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:76778800-76783200	Weak transcription	A549	lung
4	chr11:76778800-76783600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:76778800-76784000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:76779000-76782800	Weak transcription	Pancreas	Pancrea
7	chr11:76779000-76783000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:76779000-76783000	Weak transcription	Primary T cells from cord blood	blood
9	chr11:76779000-76783000	Weak transcription	Right Atrium	heart
10	chr11:76779000-76783000	Weak transcription	NH-A	brain
11	chr11:76779000-76783200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:76779000-76783800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:76779000-76784000	Weak transcription	Fetal Heart	heart
14	chr11:76779000-76786800	Enhancers	Fetal Muscle Leg	muscle
15	chr11:76779200-76782600	Weak transcription	HUVEC	blood vessel
16	chr11:76779200-76783000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:76779200-76783200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:76779200-76783200	Weak transcription	Fetal Lung	lung
19	chr11:76779200-76783400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:76779200-76783400	Weak transcription	Brain Angular Gyrus	brain
21	chr11:76779200-76783600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:76779200-76783600	Weak transcription	Fetal Kidney	kidney
23	chr11:76779400-76782600	Weak transcription	Brain Anterior Caudate	brain
24	chr11:76779400-76782800	Weak transcription	Lung	lung
25	chr11:76779400-76783000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:76779400-76783000	Weak transcription	Osteobl	bone
27	chr11:76779400-76783200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:76779600-76783200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:76779600-76784200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr11:76779800-76782600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:76779800-76783200	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:76779800-76783200	Weak transcription	Small Intestine	intestine
33	chr11:76779800-76783400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:76779800-76784600	Enhancers	Muscle Satellite Cultured Cells	--
35	chr11:76779800-76785800	Enhancers	Liver	Liver
36	chr11:76780000-76782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:76780000-76784000	Enhancers	HSMM	muscle
38	chr11:76780200-76783000	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:76780400-76782600	Weak transcription	Spleen	Spleen
40	chr11:76780400-76782600	Weak transcription	NHDF-Ad	bronchial
41	chr11:76780400-76783200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:76780400-76783600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:76780400-76784000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:76780600-76783400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr11:76781000-76783000	Weak transcription	Fetal Thymus	thymus
46	chr11:76781200-76782800	Strong transcription	Fetal Stomach	stomach
47	chr11:76781200-76783000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:76781200-76783000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:76781200-76783400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:76781200-76783400	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links