Variant report

Variant	rs57329048
Chromosome Location	chr3:112884892-112884893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57703274	1.00[AMR][1000 genomes]
rs57958286	1.00[AMR][1000 genomes]
rs58388252	1.00[AMR][1000 genomes]
rs59597612	1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	1.00[AMR][1000 genomes]
rs61078134	1.00[AMR][1000 genomes]
rs61183543	1.00[AMR][1000 genomes]
rs61298854	1.00[AMR][1000 genomes]
rs6784463	1.00[AMR][1000 genomes]
rs6788565	1.00[AMR][1000 genomes]
rs6804726	1.00[AMR][1000 genomes]
rs73853713	1.00[AMR][1000 genomes]
rs73853715	1.00[AMR][1000 genomes]
rs73854002	1.00[AMR][1000 genomes]
rs73857306	1.00[AMR][1000 genomes]
rs73857313	1.00[AMR][1000 genomes]
rs73857314	1.00[AMR][1000 genomes]
rs73857323	1.00[AMR][1000 genomes]
rs73857324	1.00[AMR][1000 genomes]
rs73857325	1.00[AMR][1000 genomes]
rs7630531	1.00[AMR][1000 genomes]
rs7643297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517636	chr3:112878536-112893640	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112876800-112885000	Weak transcription	Fetal Kidney	kidney
2	chr3:112880800-112885200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:112883800-112886600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:112883800-112886600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:112883800-112887800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:112883800-112889400	Enhancers	Fetal Muscle Leg	muscle
7	chr3:112884000-112885600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:112884000-112885600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr3:112884000-112886600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:112884000-112887000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:112884000-112887400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:112884000-112889200	Enhancers	Fetal Stomach	stomach
13	chr3:112884000-112889600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:112884000-112889600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:112884200-112885200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:112884200-112885400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:112884200-112887200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr3:112884200-112888800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:112884400-112885200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:112884400-112885600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:112884400-112885600	Enhancers	Colon Smooth Muscle	Colon
22	chr3:112884400-112886400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:112884400-112887800	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:112884400-112889400	Enhancers	Fetal Lung	lung
25	chr3:112884800-112885400	Enhancers	Fetal Thymus	thymus
26	chr3:112884800-112885600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr3:112884800-112885600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr3:112884800-112886400	Enhancers	Placenta	Placenta
29	chr3:112884800-112886600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr3:112884800-112886800	Enhancers	Adipose Nuclei	Adipose
31	chr3:112884800-112888000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links