Variant report

Variant	rs61298854
Chromosome Location	chr3:112814735-112814736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:112814527-112814745	IMR90	lung:	n/a	chr3:112814671-112814684
2	CEBPB	chr3:112814662-112814789	H1-hESC	embryonic stem cell:	n/a	chr3:112814671-112814684

Variant related genes	Relation type
ENSG00000238593	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57329048	1.00[AMR][1000 genomes]
rs57703274	1.00[AMR][1000 genomes]
rs57958286	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58388252	1.00[AMR][1000 genomes]
rs59597612	1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	1.00[AMR][1000 genomes]
rs61078134	1.00[AMR][1000 genomes]
rs61183543	1.00[AMR][1000 genomes]
rs6784463	1.00[AMR][1000 genomes]
rs6788565	1.00[AMR][1000 genomes]
rs6804726	1.00[AMR][1000 genomes]
rs73853713	1.00[AMR][1000 genomes]
rs73853715	1.00[AMR][1000 genomes]
rs73854002	1.00[AMR][1000 genomes]
rs73857306	1.00[AMR][1000 genomes]
rs73857313	1.00[AMR][1000 genomes]
rs73857314	1.00[AMR][1000 genomes]
rs73857323	1.00[AMR][1000 genomes]
rs73857324	1.00[AMR][1000 genomes]
rs73857325	1.00[AMR][1000 genomes]
rs7630531	1.00[AMR][1000 genomes]
rs7643297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv877344	chr3:112789865-112854339	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
2	chr3:112808800-112832400	Weak transcription	Primary T cells from cord blood	blood
3	chr3:112811800-112815000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:112812000-112816600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:112812200-112816200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:112812200-112816200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:112812800-112815600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:112812800-112816600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:112813000-112815600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr3:112813000-112816200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr3:112813400-112815200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:112813600-112815000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:112813600-112816800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:112813800-112815000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:112813800-112815000	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:112813800-112815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:112813800-112816600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:112814600-112814800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:112814600-112815600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:112814600-112816800	Enhancers	A549	lung
21	chr3:112814600-112817600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr3:112814600-112818200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:112814600-112818200	Enhancers	HMEC	breast

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