Variant report

Variant	rs73857313
Chromosome Location	chr3:112716781-112716782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:112715780..112719383-chr3:112720477..112724820,4	MCF-7	breast:
2	chr3:112716379..112718030-chr3:112718654..112721111,2	K562	blood:
3	chr3:112709443..112715203-chr3:112715449..112720503,7	MCF-7	breast:
4	chr3:112708475..112712814-chr3:112716672..112721404,6	MCF-7	breast:
5	chr3:112713372..112715883-chr3:112716747..112720501,3	MCF-7	breast:
6	chr3:112708277..112711427-chr3:112715953..112720646,6	K562	blood:

Variant related genes	Relation type
ENSG00000163607	Chromatin interaction
ENSG00000272844	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57329048	1.00[AMR][1000 genomes]
rs57703274	1.00[AMR][1000 genomes]
rs57958286	1.00[AMR][1000 genomes]
rs58388252	1.00[AMR][1000 genomes]
rs59597612	1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61078134	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61183543	1.00[AMR][1000 genomes]
rs61298854	1.00[AMR][1000 genomes]
rs6784463	1.00[AMR][1000 genomes]
rs6788565	1.00[AMR][1000 genomes]
rs6804726	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853713	1.00[AMR][1000 genomes]
rs73853715	1.00[AMR][1000 genomes]
rs73854002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857306	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857323	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7630531	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7643297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112710400-112721200	Weak transcription	Lung	lung
2	chr3:112710400-112721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:112710400-112721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:112710400-112724200	Weak transcription	Small Intestine	intestine
5	chr3:112710400-112737400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:112710600-112716800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:112710600-112717000	Weak transcription	Esophagus	oesophagus
8	chr3:112710600-112717000	Weak transcription	Left Ventricle	heart
9	chr3:112710600-112721000	Weak transcription	Pancreas	Pancrea
10	chr3:112710600-112721000	Weak transcription	Right Ventricle	heart
11	chr3:112710600-112721000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:112710600-112721200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:112710600-112721200	Weak transcription	Ovary	ovary
14	chr3:112710600-112721400	Weak transcription	HSMMtube	muscle
15	chr3:112710600-112723800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr3:112710600-112725000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr3:112710800-112718400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:112710800-112718800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:112710800-112721400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:112711000-112717200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:112711200-112718600	Weak transcription	Colonic Mucosa	Colon
22	chr3:112711400-112716800	Weak transcription	Fetal Muscle Leg	muscle
23	chr3:112711400-112716800	Weak transcription	HSMM	muscle
24	chr3:112711400-112716800	Weak transcription	Osteobl	bone
25	chr3:112711400-112717000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr3:112711400-112717000	Weak transcription	Thymus	Thymus
27	chr3:112711400-112717200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:112711400-112718000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:112711400-112718800	Weak transcription	Fetal Stomach	stomach
30	chr3:112711400-112719800	Weak transcription	Brain Substantia Nigra	brain
31	chr3:112711400-112721200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:112711400-112721200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr3:112711400-112721200	Weak transcription	Psoas Muscle	Psoas
34	chr3:112711400-112721200	Weak transcription	Spleen	Spleen
35	chr3:112711400-112736600	Weak transcription	Stomach Mucosa	stomach
36	chr3:112711600-112716800	Weak transcription	NH-A	brain
37	chr3:112711600-112717000	Weak transcription	Fetal Intestine Large	intestine
38	chr3:112711600-112717200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr3:112711600-112717400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr3:112711600-112718600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr3:112711600-112718600	Weak transcription	NHDF-Ad	bronchial
42	chr3:112711600-112718800	Weak transcription	Fetal Intestine Small	intestine
43	chr3:112711600-112720200	Weak transcription	K562	blood
44	chr3:112711600-112721000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr3:112711600-112721000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr3:112711600-112721200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:112711800-112716800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:112711800-112716800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr3:112711800-112716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:112711800-112716800	Weak transcription	Duodenum Mucosa	Duodenum

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