Variant report

Variant	rs73853715
Chromosome Location	chr3:112789718-112789719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112788849..112790684-chr3:112806290..112809060,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57329048	1.00[AMR][1000 genomes]
rs57703274	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57958286	1.00[AMR][1000 genomes]
rs58388252	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59597612	1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	1.00[AMR][1000 genomes]
rs61078134	1.00[AMR][1000 genomes]
rs61183543	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61298854	1.00[AMR][1000 genomes]
rs6784463	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6788565	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6804726	1.00[AMR][1000 genomes]
rs73853713	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854002	1.00[AMR][1000 genomes]
rs73857306	1.00[AMR][1000 genomes]
rs73857313	1.00[AMR][1000 genomes]
rs73857314	1.00[AMR][1000 genomes]
rs73857323	1.00[AMR][1000 genomes]
rs73857324	1.00[AMR][1000 genomes]
rs73857325	1.00[AMR][1000 genomes]
rs7630531	1.00[AMR][1000 genomes]
rs7643297	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
2	chr3:112784600-112792600	Weak transcription	Left Ventricle	heart
3	chr3:112784800-112824000	Weak transcription	Primary B cells from cord blood	blood
4	chr3:112787000-112791400	Weak transcription	Primary T cells from cord blood	blood
5	chr3:112788400-112790200	Enhancers	Fetal Muscle Leg	muscle
6	chr3:112788400-112790200	Enhancers	Fetal Stomach	stomach
7	chr3:112788400-112790600	Enhancers	Fetal Lung	lung
8	chr3:112788800-112789800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:112788800-112790000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:112788800-112790200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:112788800-112790200	Enhancers	NHLF	lung
12	chr3:112789000-112790000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:112789200-112789800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:112789200-112790000	Enhancers	HSMMtube	muscle
15	chr3:112789400-112789800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:112789400-112789800	Enhancers	GM12878-XiMat	blood
17	chr3:112789400-112789800	Flanking Active TSS	NHDF-Ad	bronchial
18	chr3:112789400-112790000	Enhancers	Osteobl	bone
19	chr3:112789400-112790200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:112789600-112790000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:112789600-112790000	Enhancers	Fetal Kidney	kidney
22	chr3:112789600-112790000	Flanking Active TSS	A549	lung
23	chr3:112789600-112790200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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