Variant report

Variant	rs73853713
Chromosome Location	chr3:112784523-112784524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57329048	1.00[AMR][1000 genomes]
rs57703274	1.00[AMR][1000 genomes]
rs57958286	1.00[AMR][1000 genomes]
rs58388252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59597612	1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	1.00[AMR][1000 genomes]
rs61078134	1.00[AMR][1000 genomes]
rs61183543	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61298854	1.00[AMR][1000 genomes]
rs6784463	1.00[AMR][1000 genomes]
rs6788565	1.00[AMR][1000 genomes]
rs6804726	1.00[AMR][1000 genomes]
rs73853715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73854002	1.00[AMR][1000 genomes]
rs73857306	1.00[AMR][1000 genomes]
rs73857313	1.00[AMR][1000 genomes]
rs73857314	1.00[AMR][1000 genomes]
rs73857323	1.00[AMR][1000 genomes]
rs73857324	1.00[AMR][1000 genomes]
rs73857325	1.00[AMR][1000 genomes]
rs7630531	1.00[AMR][1000 genomes]
rs7643297	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv3951	chr3:112759554-112800236	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112763000-112789200	Weak transcription	HSMMtube	muscle
2	chr3:112770800-112787400	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr3:112771000-112798600	Weak transcription	Psoas Muscle	Psoas
4	chr3:112771200-112788800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:112776600-112789000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:112782800-112788400	Weak transcription	Fetal Muscle Leg	muscle
7	chr3:112783400-112788400	Weak transcription	Fetal Stomach	stomach
8	chr3:112783600-112784600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:112783600-112787200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr3:112783800-112784600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:112784000-112785000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr3:112784000-112786600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:112784200-112784600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr3:112784400-112784600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:112784400-112784600	ZNF genes & repeats	Left Ventricle	heart
16	chr3:112784400-112784800	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr3:112784400-112784800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
18	chr3:112784400-112786200	ZNF genes & repeats	Primary T cells from cord blood	blood

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