Variant report

Variant	rs73854002
Chromosome Location	chr3:112696153-112696154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr3:112695768-112696164	GM12878	blood:	n/a	n/a
2	BHLHE40	chr3:112695839-112696195	GM12878	blood:	n/a	n/a
3	RUNX3	chr3:112695773-112696156	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112357856..112364091-chr3:112692717..112699765,9	MCF-7	breast:
2	chr3:112694853..112696696-chr3:112708758..112711282,2	MCF-7	breast:

Variant related genes	Relation type
CD200R1	TF binding region
ENSG00000091986	Chromatin interaction
ENSG00000163607	Chromatin interaction
ENSG00000272844	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57329048	1.00[AMR][1000 genomes]
rs57703274	1.00[AMR][1000 genomes]
rs57958286	1.00[AMR][1000 genomes]
rs58388252	1.00[AMR][1000 genomes]
rs59597612	1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61078134	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61183543	1.00[AMR][1000 genomes]
rs61298854	1.00[AMR][1000 genomes]
rs6784463	1.00[AMR][1000 genomes]
rs6788565	1.00[AMR][1000 genomes]
rs6804726	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853713	1.00[AMR][1000 genomes]
rs73853715	1.00[AMR][1000 genomes]
rs73857306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857314	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857324	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857325	1.00[AMR][1000 genomes]
rs7630531	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7643297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112694000-112697000	Enhancers	Primary B cells from peripheral blood	blood
2	chr3:112694200-112697600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:112694200-112698200	Enhancers	Primary B cells from cord blood	blood
4	chr3:112694400-112698400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:112694600-112696600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr3:112694600-112697000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:112694600-112698200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:112694800-112696200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr3:112695000-112698600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:112695000-112702000	Weak transcription	Fetal Thymus	thymus
11	chr3:112695200-112697200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr3:112695200-112697400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr3:112695200-112698200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr3:112695200-112701200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:112695400-112697000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:112695400-112698200	Enhancers	Primary T cells from cord blood	blood
17	chr3:112695400-112698200	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr3:112695400-112701600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:112695400-112701800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:112695600-112696200	Flanking Active TSS	GM12878-XiMat	blood
21	chr3:112695800-112696200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr3:112695800-112696200	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr3:112695800-112696200	Enhancers	NHLF	lung
24	chr3:112695800-112696800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:112695800-112697600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr3:112696000-112696200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:112696000-112696400	Enhancers	Thymus	Thymus
28	chr3:112696000-112698000	Weak transcription	Adipose Nuclei	Adipose
29	chr3:112696000-112701600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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