Variant report

Variant	rs73857325
Chromosome Location	chr3:112740017-112740018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57329048	1.00[AMR][1000 genomes]
rs57703274	1.00[AMR][1000 genomes]
rs57958286	1.00[AMR][1000 genomes]
rs58388252	1.00[AMR][1000 genomes]
rs59597612	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61078134	1.00[AMR][1000 genomes]
rs61183543	1.00[AMR][1000 genomes]
rs61298854	1.00[AMR][1000 genomes]
rs6784463	1.00[AMR][1000 genomes]
rs6788565	1.00[AMR][1000 genomes]
rs6804726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853713	1.00[AMR][1000 genomes]
rs73853715	1.00[AMR][1000 genomes]
rs73854002	1.00[AMR][1000 genomes]
rs73857306	1.00[AMR][1000 genomes]
rs73857313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857314	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73857324	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7630531	1.00[AMR][1000 genomes]
rs7643297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112739000-112740200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:112739000-112740800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:112739000-112740800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:112739000-112742400	Weak transcription	Gastric	stomach
5	chr3:112739200-112740400	Enhancers	NHEK	skin
6	chr3:112739200-112741400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr3:112739200-112744000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:112739400-112740200	Enhancers	Stomach Smooth Muscle	stomach
9	chr3:112739400-112741200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr3:112739600-112740200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:112739600-112743000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr3:112739800-112740400	Enhancers	Dnd41	blood
13	chr3:112739800-112743600	Weak transcription	Fetal Thymus	thymus
14	chr3:112740000-112740800	Enhancers	Primary T cells from cord blood	blood
15	chr3:112740000-112740800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr3:112740000-112740800	Enhancers	HMEC	breast
17	chr3:112740000-112742600	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:112740000-112743400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:112740000-112743600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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