Variant report

Variant	rs59597612
Chromosome Location	chr3:112757784-112757785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57329048	1.00[AMR][1000 genomes]
rs57703274	1.00[AMR][1000 genomes]
rs57958286	1.00[AMR][1000 genomes]
rs58388252	1.00[AMR][1000 genomes]
rs59599263	1.00[AMR][1000 genomes]
rs60515525	1.00[AMR][1000 genomes]
rs60691321	1.00[AMR][1000 genomes]
rs61078134	1.00[AMR][1000 genomes]
rs61183543	1.00[AMR][1000 genomes]
rs61298854	1.00[AMR][1000 genomes]
rs6784463	1.00[AMR][1000 genomes]
rs6788565	1.00[AMR][1000 genomes]
rs6804726	1.00[AMR][1000 genomes]
rs73853713	1.00[AMR][1000 genomes]
rs73853715	1.00[AMR][1000 genomes]
rs73854002	1.00[AMR][1000 genomes]
rs73857306	1.00[AMR][1000 genomes]
rs73857313	1.00[AMR][1000 genomes]
rs73857314	1.00[AMR][1000 genomes]
rs73857323	1.00[AMR][1000 genomes]
rs73857324	1.00[AMR][1000 genomes]
rs73857325	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7630531	1.00[AMR][1000 genomes]
rs7643297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112740800-112770200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:112749800-112762800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:112757400-112757800	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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