Variant report

Variant	rs57614093
Chromosome Location	chr11:71988825-71988826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11548491	0.81[ASN][1000 genomes]
rs12416741	0.93[ASN][1000 genomes]
rs12418637	0.82[EUR][1000 genomes]
rs1783632	0.94[ASN][1000 genomes]
rs1784257	0.94[ASN][1000 genomes]
rs2276046	0.81[ASN][1000 genomes]
rs2508201	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508204	0.90[ASN][1000 genomes]
rs2508861	0.94[ASN][1000 genomes]
rs2508863	0.82[ASN][1000 genomes]
rs2508865	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508866	0.94[ASN][1000 genomes]
rs36049191	0.87[ASN][1000 genomes]
rs3750906	0.81[EUR][1000 genomes]
rs3900852	0.87[ASN][1000 genomes]
rs472837	0.94[ASN][1000 genomes]
rs474629	0.84[EUR][1000 genomes]
rs487288	0.94[ASN][1000 genomes]
rs504217	0.84[EUR][1000 genomes]
rs506041	0.94[ASN][1000 genomes]
rs527905	0.85[ASN][1000 genomes]
rs55723921	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56171963	0.83[EUR][1000 genomes]
rs56229279	0.94[ASN][1000 genomes]
rs56333926	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs57276029	0.87[ASN][1000 genomes]
rs57291879	0.87[ASN][1000 genomes]
rs57464210	0.87[ASN][1000 genomes]
rs57669200	0.90[ASN][1000 genomes]
rs58044536	0.81[EUR][1000 genomes]
rs58306819	0.87[ASN][1000 genomes]
rs58489620	0.94[ASN][1000 genomes]
rs58753751	0.87[ASN][1000 genomes]
rs590732	0.94[ASN][1000 genomes]
rs59427981	0.89[ASN][1000 genomes]
rs59509230	0.86[ASN][1000 genomes]
rs59612321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59980097	0.86[ASN][1000 genomes]
rs60024067	0.90[ASN][1000 genomes]
rs60849224	0.87[ASN][1000 genomes]
rs61036532	0.81[EUR][1000 genomes]
rs61563240	0.87[ASN][1000 genomes]
rs650834	0.93[ASN][1000 genomes]
rs70940824	0.85[ASN][1000 genomes]
rs7108974	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7110260	0.85[ASN][1000 genomes]
rs7116854	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7130652	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528886	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73528892	0.94[ASN][1000 genomes]
rs73528897	0.87[ASN][1000 genomes]
rs7952074	0.87[ASN][1000 genomes]
rs9886	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57614093	CLPB	cis	Artery Aorta	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71985200-71990200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:71988000-71990200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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