Variant report

Variant	rs57669200
Chromosome Location	chr11:72026863-72026864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72015634..72019763-chr11:72026377..72029830,4	K562	blood:

Variant related genes	Relation type
ENSG00000162129	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12416741	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1783632	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1784257	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2508199	0.84[EUR][1000 genomes]
rs2508201	0.90[ASN][1000 genomes]
rs2508204	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2508861	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2508865	0.90[ASN][1000 genomes]
rs2508866	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36049191	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs472837	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs477354	0.84[EUR][1000 genomes]
rs487288	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs506041	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55723921	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56229279	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56333926	0.96[ASN][1000 genomes]
rs57276029	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57291879	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57464210	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57614093	0.90[ASN][1000 genomes]
rs58306819	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58489620	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58753751	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs590732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59427981	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59509230	0.87[ASN][1000 genomes]
rs59612321	0.90[ASN][1000 genomes]
rs59980097	0.87[ASN][1000 genomes]
rs60024067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60849224	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61563240	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs650834	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7108974	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7116854	0.90[ASN][1000 genomes]
rs7130652	0.90[ASN][1000 genomes]
rs73528886	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73528892	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73528897	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7952074	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71995600-72028000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:72001000-72039800	Weak transcription	Psoas Muscle	Psoas
3	chr11:72001800-72032600	Weak transcription	A549	lung
4	chr11:72002800-72044600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:72003200-72028600	Strong transcription	Lung	lung
6	chr11:72003200-72029000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:72003200-72031200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:72003200-72033600	Strong transcription	Dnd41	blood
9	chr11:72003200-72034200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:72003200-72034400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:72003200-72041800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:72003200-72041800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:72006000-72034600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:72006200-72040000	Weak transcription	Stomach Mucosa	stomach
15	chr11:72008400-72044600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr11:72013600-72040200	Weak transcription	Fetal Kidney	kidney
18	chr11:72013600-72040800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:72014400-72032600	Weak transcription	HUVEC	blood vessel
20	chr11:72014600-72045000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:72016600-72029000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:72018800-72027000	Weak transcription	Hela-S3	cervix
23	chr11:72020000-72029400	Weak transcription	Fetal Brain Male	brain
24	chr11:72020400-72033400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr11:72020400-72039600	Weak transcription	Fetal Lung	lung
26	chr11:72020400-72039600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:72020600-72032600	Weak transcription	NH-A	brain
28	chr11:72020600-72032600	Weak transcription	NHDF-Ad	bronchial
29	chr11:72020600-72032600	Weak transcription	NHLF	lung
30	chr11:72020800-72028800	Strong transcription	Placenta	Placenta
31	chr11:72020800-72029200	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:72020800-72030200	Strong transcription	HepG2	liver
33	chr11:72021000-72037200	Weak transcription	Osteobl	bone
34	chr11:72021200-72033200	Strong transcription	Fetal Stomach	stomach
35	chr11:72021600-72028400	Strong transcription	Adipose Nuclei	Adipose
36	chr11:72021600-72029200	Strong transcription	Spleen	Spleen
37	chr11:72021800-72037400	Weak transcription	HMEC	breast
38	chr11:72022400-72029200	Strong transcription	Liver	Liver
39	chr11:72022600-72028000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr11:72022600-72028600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:72022600-72028800	Strong transcription	Primary B cells from cord blood	blood
42	chr11:72022600-72029400	Strong transcription	Fetal Muscle Trunk	muscle
43	chr11:72022600-72030200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:72022800-72028000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr11:72022800-72028400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:72023000-72029400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:72023200-72027800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:72023400-72027400	Strong transcription	Brain Anterior Caudate	brain
49	chr11:72023400-72027600	Strong transcription	Brain Hippocampus Middle	brain
50	chr11:72023600-72028200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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