Variant report

Variant rs578120746
Chromosome Location chr19:53342655-53342656
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:53333600-53345000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr19:53335000-53342800 Weak transcription Skeletal Muscle Male skeletal muscle
3 chr19:53338000-53343400 Weak transcription iPS-15b Cell Line embryonic stem cell
4 chr19:53338800-53349200 ZNF genes & repeats Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr19:53338800-53352000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr19:53338800-53355000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
7 chr19:53339000-53345800 Strong transcription Placenta Placenta
8 chr19:53339000-53357600 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
9 chr19:53339000-53357800 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
10 chr19:53339000-53359200 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
11 chr19:53339200-53350600 ZNF genes & repeats Rectal Mucosa Donor 29 rectum
12 chr19:53339400-53348200 ZNF genes & repeats Adipose Nuclei Adipose
13 chr19:53339600-53348600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
14 chr19:53339600-53351600 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
15 chr19:53340400-53350200 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr19:53340600-53348000 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
17 chr19:53340600-53348400 ZNF genes & repeats Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr19:53340600-53349200 ZNF genes & repeats Foreskin Fibroblast Primary Cells skin01 Skin
19 chr19:53340600-53349800 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
20 chr19:53340600-53350200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
21 chr19:53340600-53355000 ZNF genes & repeats Duodenum Mucosa Duodenum
22 chr19:53340800-53344200 Strong transcription Ovary ovary
23 chr19:53340800-53347800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
24 chr19:53340800-53348000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr19:53340800-53349800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr19:53340800-53350400 Strong transcription Dnd41 blood
27 chr19:53340800-53352000 Strong transcription Fetal Brain Female brain
28 chr19:53340800-53355000 ZNF genes & repeats Primary hematopoietic stem cells blood
29 chr19:53340800-53355000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
30 chr19:53340800-53357400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
31 chr19:53340800-53357800 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
32 chr19:53341000-53343200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
33 chr19:53341000-53344200 Weak transcription Fetal Brain Male brain
34 chr19:53341200-53342800 Strong transcription Cortex derived primary cultured neurospheres brain
35 chr19:53341200-53344000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
36 chr19:53341200-53352000 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
37 chr19:53341200-53353800 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr19:53341400-53343200 Strong transcription HUES64 Cell Line embryonic stem cell
39 chr19:53341400-53343200 Strong transcription iPS-20b Cell Line embryonic stem cell
40 chr19:53341400-53352200 ZNF genes & repeats Primary B cells from cord blood blood
41 chr19:53341600-53343000 Weak transcription Brain Cingulate Gyrus brain
42 chr19:53341600-53343400 Weak transcription Placenta Amnion Placenta Amnion
43 chr19:53342000-53346200 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
44 chr19:53342000-53346200 ZNF genes & repeats Osteobl bone
45 chr19:53342000-53350400 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
46 chr19:53342000-53352400 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
47 chr19:53342000-53353000 ZNF genes & repeats Primary T cells from cord blood blood
48 chr19:53342200-53342800 ZNF genes & repeats Fetal Thymus thymus
49 chr19:53342200-53343400 ZNF genes & repeats H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr19:53342200-53343400 Strong transcription Fetal Muscle Trunk muscle

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