Variant report

Variant	rs57891105
Chromosome Location	chr6:64589501-64589502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PHF3-9	chr6:64589092-64590517	ucscGeneNc_uc010kai_1
2	lnc-PHF3-9	chr6:64589092-64590494	NONHSAT113359

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11753940	0.82[ASN][1000 genomes]
rs11754728	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11755149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755371	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11755458	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11755460	0.83[ASN][1000 genomes]
rs11757713	0.84[ASN][1000 genomes]
rs11757834	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11758365	0.83[ASN][1000 genomes]
rs1333096	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1333097	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1572115	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs16894562	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1999579	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34254442	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs52546	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55678650	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs55802833	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56008921	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56088368	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56172936	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs56302757	0.80[ASN][1000 genomes]
rs56360535	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs57217151	0.82[ASN][1000 genomes]
rs57305989	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57319124	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57657484	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57888259	0.81[ASN][1000 genomes]
rs58198138	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs58247688	0.83[ASN][1000 genomes]
rs58531869	0.81[ASN][1000 genomes]
rs58669837	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59217667	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59674359	0.97[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60564402	0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60622008	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60694786	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61079290	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61094361	0.83[ASN][1000 genomes]
rs61268055	0.81[ASN][1000 genomes]
rs61606312	0.83[ASN][1000 genomes]
rs66462731	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66481681	0.83[ASN][1000 genomes]
rs66589841	0.83[ASN][1000 genomes]
rs66752943	0.83[ASN][1000 genomes]
rs66804407	0.83[ASN][1000 genomes]
rs66960758	0.97[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs66973400	0.83[ASN][1000 genomes]
rs67044231	0.83[ASN][1000 genomes]
rs67050101	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67069403	0.83[ASN][1000 genomes]
rs67149738	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs67362704	0.83[ASN][1000 genomes]
rs67632239	0.83[ASN][1000 genomes]
rs67632720	0.83[ASN][1000 genomes]
rs67722441	0.83[ASN][1000 genomes]
rs67725686	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67727731	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67733371	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs67767936	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67856629	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67890600	0.83[ASN][1000 genomes]
rs67904296	0.97[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs67935772	0.83[ASN][1000 genomes]
rs67939679	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67958548	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67959580	0.83[ASN][1000 genomes]
rs68132675	0.83[ASN][1000 genomes]
rs68167248	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68177305	0.83[ASN][1000 genomes]
rs6933866	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72886339	0.83[ASN][1000 genomes]
rs72886350	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72888273	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72890149	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7758431	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1025270	chr6:64574202-64608983	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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