Variant report

Variant	rs61606312
Chromosome Location	chr6:64424525-64424526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64420787..64422833-chr6:64423125..64427172,4	K562	blood:
2	chr6:64418755..64420387-chr6:64422922..64425376,2	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs11753940	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11754041	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11754728	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755149	0.81[ASN][1000 genomes]
rs11755371	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755458	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755460	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756799	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756833	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11757713	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11757834	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11758365	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758738	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1197983	0.87[ASN][1000 genomes]
rs1333096	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1333097	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572115	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1681939	0.88[ASN][1000 genomes]
rs16894562	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1905593	0.87[ASN][1000 genomes]
rs1999579	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2008452	0.87[ASN][1000 genomes]
rs2295184	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34254442	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3757350	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3778647	0.93[ASN][1000 genomes]
rs3778648	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800491	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800492	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3823446	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41271589	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs52546	0.83[ASN][1000 genomes]
rs55678650	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55802833	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56008921	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56088368	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56172936	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56300303	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56302757	0.88[ASN][1000 genomes]
rs56360535	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57217151	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57280061	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57305989	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57319124	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57657484	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57888259	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57891105	0.83[ASN][1000 genomes]
rs58198138	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58247688	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58531869	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58669837	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59217667	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59674359	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60289981	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60564402	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60622008	0.86[ASN][1000 genomes]
rs60694786	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60949185	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61079290	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61094361	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268055	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61369019	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66462731	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66481681	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66514362	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66520187	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66589841	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66752943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66804407	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66882701	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66960758	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66973400	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67044231	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67050101	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67069403	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67149738	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67169857	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67342772	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67362704	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632239	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632720	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67674014	0.93[ASN][1000 genomes]
rs67722441	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67725686	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67727731	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67733371	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67767936	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67856629	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67890600	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67904296	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67935772	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67939679	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67958548	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67959580	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68128834	0.93[ASN][1000 genomes]
rs68132675	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68167248	0.81[ASN][1000 genomes]
rs68177305	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911092	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6933866	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72884634	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72884640	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72886339	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72886350	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888273	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72890149	0.86[ASN][1000 genomes]
rs7758431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958324	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64392800-64425200	Weak transcription	NHEK	skin
2	chr6:64401000-64426400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:64404000-64424600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr6:64404200-64424600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:64404200-64424600	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:64404200-64426600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:64404400-64424800	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:64404400-64425000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:64404400-64426800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:64404800-64425000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr6:64405400-64426400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:64406000-64426400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:64408200-64425200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:64408200-64425200	Strong transcription	Placenta	Placenta
15	chr6:64408400-64424600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:64408400-64426400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:64409800-64426600	Strong transcription	Primary T cells from cord blood	blood
18	chr6:64415400-64431200	Weak transcription	Esophagus	oesophagus
19	chr6:64417600-64424600	Strong transcription	Primary hematopoietic stem cells	blood
20	chr6:64419800-64425000	Weak transcription	Fetal Heart	heart
21	chr6:64422200-64424600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:64422400-64424800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr6:64422600-64425000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:64422600-64425400	Weak transcription	Small Intestine	intestine
25	chr6:64422600-64441800	Weak transcription	HSMM	muscle
26	chr6:64423000-64425200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:64423000-64428800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:64423200-64424800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:64423200-64424800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:64423200-64424800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:64423200-64424800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:64423200-64424800	Weak transcription	Brain Substantia Nigra	brain
33	chr6:64423200-64424800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr6:64423200-64427800	Weak transcription	Psoas Muscle	Psoas
35	chr6:64423200-64428400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:64423200-64428400	Weak transcription	NHLF	lung
37	chr6:64423400-64425000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:64423400-64425000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:64423400-64425000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr6:64423400-64425000	Weak transcription	Colonic Mucosa	Colon
41	chr6:64423400-64425000	Weak transcription	Fetal Stomach	stomach
42	chr6:64423400-64425200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:64423400-64425600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:64423400-64426200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:64423400-64426600	Weak transcription	Aorta	Aorta
46	chr6:64423400-64427600	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:64423400-64427600	Weak transcription	Ovary	ovary
48	chr6:64423400-64428000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:64423400-64428400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:64423400-64431200	Weak transcription	Gastric	stomach

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