Variant report

Variant	rs66804407
Chromosome Location	chr6:64451025-64451026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs11753940	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11754041	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11754728	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755149	0.81[ASN][1000 genomes]
rs11755371	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755458	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755460	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756799	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756833	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11757713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11757834	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11758365	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758738	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1197983	0.87[ASN][1000 genomes]
rs1333096	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1333097	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572115	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1681939	0.88[ASN][1000 genomes]
rs16894562	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1905593	0.87[ASN][1000 genomes]
rs1999579	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2008452	0.87[ASN][1000 genomes]
rs2295184	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34254442	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3757350	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3778647	0.93[ASN][1000 genomes]
rs3778648	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800491	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800492	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800493	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3823446	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41271589	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs52546	0.83[ASN][1000 genomes]
rs55678650	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55802833	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56008921	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56088368	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56172936	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56300303	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56302757	0.88[ASN][1000 genomes]
rs56360535	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57217151	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57280061	0.93[ASN][1000 genomes]
rs57305989	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57319124	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57657484	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57888259	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57891105	0.83[ASN][1000 genomes]
rs58198138	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58247688	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58531869	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58669837	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59217667	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59674359	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60289981	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60564402	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60622008	0.86[ASN][1000 genomes]
rs60694786	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60949185	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61079290	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61094361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268055	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61369019	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61606312	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66462731	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66481681	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66514362	0.84[ASN][1000 genomes]
rs66520187	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66589841	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66752943	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66882701	0.93[ASN][1000 genomes]
rs66960758	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66973400	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67044231	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67050101	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67069403	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67149738	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67169857	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67342772	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67362704	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632239	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632720	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67674014	0.93[ASN][1000 genomes]
rs67722441	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67725686	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67727731	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67733371	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67767936	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67856629	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67890600	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67904296	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67935772	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67939679	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67958548	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67959580	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68128834	0.93[ASN][1000 genomes]
rs68132675	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68167248	0.81[ASN][1000 genomes]
rs68177305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911092	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6933866	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72884634	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72884640	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72886339	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72886350	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888273	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72890149	0.86[ASN][1000 genomes]
rs7758431	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958324	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv969307	chr6:64445020-64468321	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64437400-64459600	Weak transcription	Aorta	Aorta
2	chr6:64442000-64451800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:64442000-64451800	Weak transcription	Small Intestine	intestine
4	chr6:64449200-64451200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:64449200-64452400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:64449200-64452600	Enhancers	Hela-S3	cervix
7	chr6:64449400-64452400	Enhancers	NHEK	skin
8	chr6:64449600-64452000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:64449600-64453000	Weak transcription	Liver	Liver
10	chr6:64449800-64453400	Weak transcription	HepG2	liver
11	chr6:64450000-64451200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:64450000-64451400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:64450000-64452600	Enhancers	HMEC	breast
14	chr6:64450200-64451800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:64450200-64452400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:64450200-64452600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:64450400-64451400	Enhancers	HUVEC	blood vessel
18	chr6:64450600-64451600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:64450600-64452600	Enhancers	Stomach Mucosa	stomach
20	chr6:64451000-64461400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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