Variant report

Variant	rs56302757
Chromosome Location	chr6:64511208-64511209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64062103..64065068-chr6:64510364..64512443,2	MCF-7	breast:
2	chr6:64281948..64284181-chr6:64510881..64512793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11753940	0.87[ASN][1000 genomes]
rs11754041	0.84[ASN][1000 genomes]
rs11754728	0.83[ASN][1000 genomes]
rs11755371	0.81[ASN][1000 genomes]
rs11755458	0.88[ASN][1000 genomes]
rs11755460	0.88[ASN][1000 genomes]
rs11756799	0.84[ASN][1000 genomes]
rs11756833	0.84[ASN][1000 genomes]
rs11757713	0.87[ASN][1000 genomes]
rs11757834	0.90[ASN][1000 genomes]
rs11758365	0.88[ASN][1000 genomes]
rs11758738	0.84[ASN][1000 genomes]
rs1197983	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1333096	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1333097	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1572115	0.93[ASN][1000 genomes]
rs1681939	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16894562	0.90[ASN][1000 genomes]
rs1905593	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1999579	0.83[ASN][1000 genomes]
rs2008452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34254442	0.90[ASN][1000 genomes]
rs3757350	0.84[ASN][1000 genomes]
rs3778647	0.82[ASN][1000 genomes]
rs3778648	0.84[ASN][1000 genomes]
rs3800491	0.84[ASN][1000 genomes]
rs3800492	0.84[ASN][1000 genomes]
rs3800493	0.84[ASN][1000 genomes]
rs3823446	0.84[ASN][1000 genomes]
rs41271589	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs52546	0.80[ASN][1000 genomes]
rs55678650	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55802833	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56008921	0.83[ASN][1000 genomes]
rs56088368	0.83[ASN][1000 genomes]
rs56172936	0.82[ASN][1000 genomes]
rs56300303	0.84[ASN][1000 genomes]
rs56360535	0.93[ASN][1000 genomes]
rs57217151	0.87[ASN][1000 genomes]
rs57280061	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57305989	0.90[ASN][1000 genomes]
rs57319124	0.81[ASN][1000 genomes]
rs57657484	0.83[ASN][1000 genomes]
rs57888259	0.86[ASN][1000 genomes]
rs57891105	0.80[ASN][1000 genomes]
rs58198138	0.90[ASN][1000 genomes]
rs58247688	0.88[ASN][1000 genomes]
rs58531869	0.86[ASN][1000 genomes]
rs58669837	0.83[ASN][1000 genomes]
rs59217667	0.83[ASN][1000 genomes]
rs59674359	0.84[ASN][1000 genomes]
rs60289981	0.83[ASN][1000 genomes]
rs60564402	0.81[ASN][1000 genomes]
rs60622008	0.83[ASN][1000 genomes]
rs60694786	0.83[ASN][1000 genomes]
rs60949185	0.80[ASN][1000 genomes]
rs61079290	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61094361	0.88[ASN][1000 genomes]
rs61268055	0.86[ASN][1000 genomes]
rs61369019	0.84[ASN][1000 genomes]
rs61606312	0.88[ASN][1000 genomes]
rs66462731	0.90[ASN][1000 genomes]
rs66481681	0.88[ASN][1000 genomes]
rs66520187	0.84[ASN][1000 genomes]
rs66589841	0.88[ASN][1000 genomes]
rs66752943	0.88[ASN][1000 genomes]
rs66804407	0.88[ASN][1000 genomes]
rs66882701	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66960758	0.83[ASN][1000 genomes]
rs66973400	0.88[ASN][1000 genomes]
rs67044231	0.88[ASN][1000 genomes]
rs67050101	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67069403	0.88[ASN][1000 genomes]
rs67169857	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67342772	0.84[ASN][1000 genomes]
rs67362704	0.88[ASN][1000 genomes]
rs67632239	0.88[ASN][1000 genomes]
rs67632720	0.88[ASN][1000 genomes]
rs67674014	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67722441	0.88[ASN][1000 genomes]
rs67725686	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67727731	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67733371	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67856629	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67890600	0.88[ASN][1000 genomes]
rs67904296	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67935772	0.88[ASN][1000 genomes]
rs67939679	0.90[ASN][1000 genomes]
rs67958548	0.90[ASN][1000 genomes]
rs67959580	0.88[ASN][1000 genomes]
rs68128834	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs68132675	0.88[ASN][1000 genomes]
rs68177305	0.88[ASN][1000 genomes]
rs6911092	0.84[ASN][1000 genomes]
rs6933866	0.90[ASN][1000 genomes]
rs72884634	0.84[ASN][1000 genomes]
rs72884640	0.84[ASN][1000 genomes]
rs72886339	0.88[ASN][1000 genomes]
rs72886350	0.88[ASN][1000 genomes]
rs72888273	0.83[ASN][1000 genomes]
rs72890149	0.83[ASN][1000 genomes]
rs7758431	0.88[ASN][1000 genomes]
rs958324	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64485200-64514400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:64497000-64514400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:64505800-64512800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr6:64506200-64514400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:64509800-64514600	Weak transcription	Stomach Mucosa	stomach
6	chr6:64510000-64512800	Weak transcription	NHDF-Ad	bronchial
7	chr6:64510000-64514200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:64510200-64512600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:64511000-64511600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:64511000-64514400	Weak transcription	Liver	Liver

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