Variant report

Variant	rs66589841
Chromosome Location	chr6:64408706-64408707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64347568..64349664-chr6:64406239..64409987,3	K562	blood:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs11753940	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11754041	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11754728	0.86[ASN][1000 genomes]
rs11755149	0.81[ASN][1000 genomes]
rs11755371	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755458	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755460	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756799	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11756833	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11757713	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11757834	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11758365	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758738	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1197983	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1333096	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1333097	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1572115	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1681939	0.88[ASN][1000 genomes]
rs16894562	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1905593	0.87[ASN][1000 genomes]
rs1999579	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2008452	0.87[ASN][1000 genomes]
rs2295184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34254442	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3757350	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3778647	0.93[ASN][1000 genomes]
rs3778648	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800491	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800492	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800493	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3823446	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41271589	0.88[ASN][1000 genomes]
rs52546	0.83[ASN][1000 genomes]
rs55678650	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55802833	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56008921	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56088368	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56172936	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56300303	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56302757	0.88[ASN][1000 genomes]
rs56360535	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57217151	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57280061	0.93[ASN][1000 genomes]
rs57305989	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57319124	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57657484	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57888259	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57891105	0.83[ASN][1000 genomes]
rs58198138	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58247688	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58531869	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58669837	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59217667	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59674359	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60289981	0.94[ASN][1000 genomes]
rs60564402	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60622008	0.86[ASN][1000 genomes]
rs60694786	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60949185	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61079290	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61094361	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61268055	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61369019	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61606312	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66462731	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66481681	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66514362	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66520187	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66752943	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66804407	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66882701	0.93[ASN][1000 genomes]
rs66960758	0.86[ASN][1000 genomes]
rs66973400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67044231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67050101	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67069403	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67149738	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67169857	0.88[ASN][1000 genomes]
rs67342772	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67362704	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632720	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67674014	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67722441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67725686	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67727731	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67733371	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67767936	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67856629	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67890600	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67904296	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67935772	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67939679	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67958548	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67959580	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68128834	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68132675	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68167248	0.81[ASN][1000 genomes]
rs68177305	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911092	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6933866	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72884634	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72884640	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72886339	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72886350	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72888273	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72890149	0.86[ASN][1000 genomes]
rs7758431	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs958324	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022376	chr6:64386826-64445195	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64347000-64422400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:64354000-64421200	Weak transcription	Gastric	stomach
3	chr6:64365800-64409400	Weak transcription	Fetal Stomach	stomach
4	chr6:64370800-64413400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:64371000-64409000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:64374200-64414600	Weak transcription	HMEC	breast
7	chr6:64375600-64409000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:64384600-64414400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:64387200-64410200	Weak transcription	Colonic Mucosa	Colon
10	chr6:64387200-64421000	Weak transcription	Aorta	Aorta
11	chr6:64387400-64419400	Weak transcription	Fetal Heart	heart
12	chr6:64387600-64421000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:64387600-64423400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:64388000-64412800	Weak transcription	Lung	lung
15	chr6:64388200-64410200	Weak transcription	Fetal Brain Female	brain
16	chr6:64390000-64417600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr6:64391800-64410800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:64392200-64422400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:64392600-64409200	Weak transcription	Osteobl	bone
20	chr6:64392800-64425200	Weak transcription	NHEK	skin
21	chr6:64393200-64417600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:64393400-64423400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr6:64394600-64414000	Weak transcription	NHLF	lung
24	chr6:64394800-64408800	Weak transcription	HUVEC	blood vessel
25	chr6:64394800-64409000	Weak transcription	NHDF-Ad	bronchial
26	chr6:64394800-64413200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:64394800-64413200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:64394800-64414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:64395000-64409000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:64395000-64409600	Weak transcription	Psoas Muscle	Psoas
31	chr6:64395000-64413200	Weak transcription	NH-A	brain
32	chr6:64395000-64414000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:64395000-64414000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:64395000-64414800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr6:64395200-64413600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:64395400-64409200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:64395400-64420200	Weak transcription	Fetal Brain Male	brain
38	chr6:64395600-64409200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr6:64395600-64409200	Weak transcription	Stomach Smooth Muscle	stomach
40	chr6:64395600-64409800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr6:64395600-64411800	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:64395800-64409000	Weak transcription	Adipose Nuclei	Adipose
43	chr6:64395800-64413600	Weak transcription	Brain Anterior Caudate	brain
44	chr6:64395800-64420200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:64396000-64413600	Weak transcription	HSMMtube	muscle
46	chr6:64396200-64411000	Weak transcription	K562	blood
47	chr6:64396200-64414000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr6:64397400-64422400	Weak transcription	Pancreas	Pancrea
49	chr6:64397800-64409000	Weak transcription	Ovary	ovary
50	chr6:64397800-64410400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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