Variant report

Variant	rs60622008
Chromosome Location	chr6:64571962-64571963
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64570354..64572427-chr6:64574035..64576622,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs11753940	0.85[ASN][1000 genomes]
rs11754041	0.82[ASN][1000 genomes]
rs11754728	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755149	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11755371	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11755458	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11755460	0.86[ASN][1000 genomes]
rs11756799	0.82[ASN][1000 genomes]
rs11756833	0.82[ASN][1000 genomes]
rs11757713	0.87[ASN][1000 genomes]
rs11757834	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11758365	0.86[ASN][1000 genomes]
rs11758738	0.82[ASN][1000 genomes]
rs1333096	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1333097	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1572115	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16894562	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1999579	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008452	0.82[ASN][1000 genomes]
rs34254442	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3757350	0.82[ASN][1000 genomes]
rs3778648	0.82[ASN][1000 genomes]
rs3800491	0.82[ASN][1000 genomes]
rs3800492	0.82[ASN][1000 genomes]
rs3800493	0.82[ASN][1000 genomes]
rs3823446	0.82[ASN][1000 genomes]
rs52546	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55678650	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55802833	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56008921	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56088368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56172936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56300303	0.82[ASN][1000 genomes]
rs56302757	0.83[ASN][1000 genomes]
rs56360535	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57217151	0.85[ASN][1000 genomes]
rs57305989	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57319124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57657484	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57888259	0.84[ASN][1000 genomes]
rs57891105	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58198138	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58247688	0.86[ASN][1000 genomes]
rs58531869	0.84[ASN][1000 genomes]
rs58669837	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59217667	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59674359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60289981	0.81[ASN][1000 genomes]
rs60564402	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60694786	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61079290	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61094361	0.86[ASN][1000 genomes]
rs61268055	0.84[ASN][1000 genomes]
rs61369019	0.82[ASN][1000 genomes]
rs61606312	0.86[ASN][1000 genomes]
rs66462731	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs66481681	0.86[ASN][1000 genomes]
rs66520187	0.82[ASN][1000 genomes]
rs66589841	0.86[ASN][1000 genomes]
rs66752943	0.86[ASN][1000 genomes]
rs66804407	0.86[ASN][1000 genomes]
rs66960758	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66973400	0.86[ASN][1000 genomes]
rs67044231	0.86[ASN][1000 genomes]
rs67050101	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67069403	0.86[ASN][1000 genomes]
rs67149738	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67342772	0.82[ASN][1000 genomes]
rs67362704	0.86[ASN][1000 genomes]
rs67632239	0.86[ASN][1000 genomes]
rs67632720	0.86[ASN][1000 genomes]
rs67722441	0.86[ASN][1000 genomes]
rs67725686	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67727731	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67733371	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67767936	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67856629	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67890600	0.86[ASN][1000 genomes]
rs67904296	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67935772	0.86[ASN][1000 genomes]
rs67939679	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67958548	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs67959580	0.86[ASN][1000 genomes]
rs68132675	0.86[ASN][1000 genomes]
rs68167248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68177305	0.86[ASN][1000 genomes]
rs6911092	0.82[ASN][1000 genomes]
rs6933866	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72884634	0.82[ASN][1000 genomes]
rs72884640	0.82[ASN][1000 genomes]
rs72886339	0.86[ASN][1000 genomes]
rs72886350	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72888273	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7758431	0.86[ASN][1000 genomes]
rs958324	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64569800-64574000	Weak transcription	Fetal Heart	heart
2	chr6:64571600-64572200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:64571600-64573400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:64571600-64573400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links