Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11012858	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012863	1.00[ASN][1000 genomes]
rs11812874	1.00[ASN][1000 genomes]
rs11815966	1.00[ASN][1000 genomes]
rs11818798	1.00[ASN][1000 genomes]
rs11819144	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12252861	1.00[ASN][1000 genomes]
rs12269178	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4440933	1.00[ASN][1000 genomes]
rs58659665	1.00[ASN][1000 genomes]
rs59376688	1.00[ASN][1000 genomes]
rs59770190	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59966419	1.00[ASN][1000 genomes]
rs60504292	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61459152	1.00[ASN][1000 genomes]
rs61702317	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7069565	1.00[ASN][1000 genomes]
rs7070435	1.00[ASN][1000 genomes]
rs7076741	1.00[ASN][1000 genomes]
rs7085894	1.00[ASN][1000 genomes]
rs7090197	1.00[ASN][1000 genomes]
rs7095916	1.00[ASN][1000 genomes]
rs7099490	1.00[ASN][1000 genomes]
rs74121327	1.00[ASN][1000 genomes]
rs7905092	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22344400-22349600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

Quick Search: