Variant report

Variant	rs7905092
Chromosome Location	chr10:22400501-22400502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22393772..22396494-chr10:22400221..22401954,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10466081	1.00[CHB][hapmap]
rs10508640	1.00[CHB][hapmap]
rs10508642	1.00[CHB][hapmap]
rs11012858	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11012863	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012872	1.00[AMR][1000 genomes]
rs11012890	1.00[CHB][hapmap]
rs11012892	1.00[CHB][hapmap]
rs11012894	1.00[CHB][hapmap]
rs11812874	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815966	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816093	1.00[AMR][1000 genomes]
rs11818798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819144	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252861	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262626	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12263070	1.00[CHB][hapmap]
rs12269178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922008	1.00[CHB][hapmap]
rs16922014	1.00[CHB][hapmap]
rs16922112	1.00[CHB][hapmap]
rs4440933	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58483142	1.00[ASN][1000 genomes]
rs58659665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59376688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59770190	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60504292	1.00[ASN][1000 genomes]
rs61360705	1.00[EUR][1000 genomes]
rs61459152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61702317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069565	1.00[ASN][1000 genomes]
rs7070435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076741	1.00[ASN][1000 genomes]
rs7085894	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090197	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095916	1.00[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099490	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73596583	1.00[EUR][1000 genomes]
rs73596584	1.00[EUR][1000 genomes]
rs73596585	1.00[EUR][1000 genomes]
rs73596586	1.00[EUR][1000 genomes]
rs74121327	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122772	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7923420	1.00[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22398600-22401000	Enhancers	Fetal Stomach	stomach
2	chr10:22399000-22400800	Enhancers	Fetal Lung	lung
3	chr10:22399600-22400600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:22399600-22401400	Enhancers	Stomach Smooth Muscle	stomach
5	chr10:22400200-22400600	Enhancers	Lung	lung
6	chr10:22400200-22401000	Enhancers	Colon Smooth Muscle	Colon
7	chr10:22400200-22401000	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links