Variant report

Variant	rs11818798
Chromosome Location	chr10:22343659-22343660
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:22338378..22342147-chr10:22342540..22344331,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10466081	1.00[CHB][hapmap]
rs10508640	1.00[CHB][hapmap]
rs10508642	1.00[CHB][hapmap]
rs11012858	1.00[ASN][1000 genomes]
rs11012863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11012890	1.00[CHB][hapmap]
rs11012892	1.00[CHB][hapmap]
rs11012894	1.00[CHB][hapmap]
rs11812874	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819144	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262626	1.00[EUR][1000 genomes]
rs12263070	1.00[CHB][hapmap]
rs12269178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16922008	1.00[CHB][hapmap]
rs16922014	1.00[CHB][hapmap]
rs16922112	1.00[CHB][hapmap]
rs4440933	1.00[ASN][1000 genomes]
rs58483142	1.00[ASN][1000 genomes]
rs58659665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59376688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59770190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60504292	1.00[ASN][1000 genomes]
rs61360705	1.00[EUR][1000 genomes]
rs61459152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61702317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069565	1.00[ASN][1000 genomes]
rs7070435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076741	1.00[ASN][1000 genomes]
rs7085894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090197	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095916	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73596583	1.00[EUR][1000 genomes]
rs73596584	1.00[EUR][1000 genomes]
rs73596585	1.00[EUR][1000 genomes]
rs73596586	1.00[EUR][1000 genomes]
rs74121327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122772	1.00[EUR][1000 genomes]
rs7905092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923420	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22342400-22343800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:22343600-22344200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:22343600-22344400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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