Variant report

Variant	rs58659665
Chromosome Location	chr10:22507742-22507743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22504057..22509886-chr10:22511644..22520139,13	K562	blood:
2	chr10:22299905..22300468-chr10:22507164..22508045,2	MCF-7	breast:
3	chr10:22392525..22393206-chr10:22507186..22508102,2	MCF-7	breast:
4	chr10:22507273..22510143-chr10:22608141..22611763,3	MCF-7	breast:
5	chr10:22282230..22282981-chr10:22507493..22508473,2	MCF-7	breast:
6	chr10:22496420..22499668-chr10:22505948..22508312,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-COMMD3-2	chr10:22507003-22510097	ENSG00000260205.1

No data

Variant related genes	Relation type
ENSG00000227462	Chromatin interaction
ENSG00000168283	Chromatin interaction
ENSG00000223601	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11012858	1.00[ASN][1000 genomes]
rs11012863	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819144	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252861	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262626	1.00[EUR][1000 genomes]
rs12269178	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440933	1.00[ASN][1000 genomes]
rs58483142	1.00[ASN][1000 genomes]
rs59376688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59770190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60504292	1.00[ASN][1000 genomes]
rs61360705	1.00[EUR][1000 genomes]
rs61459152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61702317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069565	1.00[ASN][1000 genomes]
rs7070435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076741	1.00[ASN][1000 genomes]
rs7085894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099490	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73596583	1.00[EUR][1000 genomes]
rs73596584	1.00[EUR][1000 genomes]
rs73596585	1.00[EUR][1000 genomes]
rs73596586	1.00[EUR][1000 genomes]
rs74121327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122772	1.00[EUR][1000 genomes]
rs7905092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923420	1.00[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22506800-22509000	Enhancers	K562	blood
2	chr10:22507400-22507800	Enhancers	Brain Substantia Nigra	brain
3	chr10:22507400-22508200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:22507600-22508200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr10:22507600-22508600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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