Variant report

Variant	rs12269178
Chromosome Location	chr10:22349841-22349842
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11012858	1.00[ASN][1000 genomes]
rs11012863	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812874	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11819144	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12252861	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262626	1.00[EUR][1000 genomes]
rs4440933	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58483142	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58659665	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59376688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59770190	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59966419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60504292	1.00[ASN][1000 genomes]
rs61360705	1.00[EUR][1000 genomes]
rs61459152	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61702317	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7069565	1.00[ASN][1000 genomes]
rs7070435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076741	1.00[ASN][1000 genomes]
rs7085894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7095916	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099490	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73596583	1.00[EUR][1000 genomes]
rs73596584	1.00[EUR][1000 genomes]
rs73596585	1.00[EUR][1000 genomes]
rs73596586	1.00[EUR][1000 genomes]
rs74121327	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74122772	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7905092	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923420	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831808	chr10:22187850-22357814	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22348800-22350400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr10:22349200-22350400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr10:22349400-22350200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr10:22349400-22350400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:22349400-22350400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:22349400-22350400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:22349400-22350400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr10:22349400-22350400	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr10:22349600-22350000	Enhancers	Hela-S3	cervix
10	chr10:22349600-22350200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:22349600-22350400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:22349600-22350400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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