Variant report
| Variant | rs58839243 |
|---|---|
| Chromosome Location | chr7:96830496-96830497 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10265264 | 1.00[AMR][1000 genomes] |
| rs28406061 | 0.83[AMR][1000 genomes] |
| rs56032835 | 0.83[AMR][1000 genomes] |
| rs56962196 | 1.00[AMR][1000 genomes] |
| rs73708847 | 0.83[AMR][1000 genomes] |
| rs73708849 | 0.83[AMR][1000 genomes] |
| rs73708852 | 0.83[AMR][1000 genomes] |
| rs73708854 | 1.00[AMR][1000 genomes] |
| rs73708858 | 0.83[AMR][1000 genomes] |
| rs73708859 | 1.00[AMR][1000 genomes] |
| rs73708861 | 1.00[AMR][1000 genomes] |
| rs73708863 | 1.00[AMR][1000 genomes] |
| rs73708864 | 0.83[AMR][1000 genomes] |
| rs73708865 | 0.83[AMR][1000 genomes] |
| rs73708872 | 0.83[AMR][1000 genomes] |
| rs73708874 | 0.83[AMR][1000 genomes] |
| rs73708875 | 0.83[AMR][1000 genomes] |
| rs73708876 | 0.83[AMR][1000 genomes] |
| rs73708882 | 0.83[AMR][1000 genomes] |
| rs73708886 | 0.83[AMR][1000 genomes] |
| rs73708889 | 0.83[AMR][1000 genomes] |
| rs73708890 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73708893 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019725 | chr7:96749866-96850819 | Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv539029 | chr7:96749866-96850819 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv981550 | chr7:96830133-96830732 | Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:96828800-96830800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
