Variant report

Variant	rs73708886
Chromosome Location	chr7:96812901-96812902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96801538..96803188-chr7:96810156..96813004,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10265264	0.83[AMR][1000 genomes]
rs56962196	0.83[AMR][1000 genomes]
rs58839243	0.83[AMR][1000 genomes]
rs73708854	0.83[AMR][1000 genomes]
rs73708859	0.83[AMR][1000 genomes]
rs73708861	0.83[AMR][1000 genomes]
rs73708863	0.83[AMR][1000 genomes]
rs73708872	1.00[AMR][1000 genomes]
rs73708874	1.00[AMR][1000 genomes]
rs73708875	1.00[AMR][1000 genomes]
rs73708876	1.00[AMR][1000 genomes]
rs73708882	1.00[AMR][1000 genomes]
rs73708890	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2593872	chr7:96812488-96814172	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96771400-96818200	Weak transcription	A549	lung
2	chr7:96789400-96815400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:96790400-96814600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:96790600-96813600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:96790600-96813600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:96797400-96814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:96797400-96814800	Weak transcription	Pancreas	Pancrea
10	chr7:96797400-96816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:96797400-96816600	Weak transcription	Aorta	Aorta
12	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:96797800-96816000	Weak transcription	Primary B cells from cord blood	blood
14	chr7:96801200-96815400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:96803000-96818400	Weak transcription	Psoas Muscle	Psoas
16	chr7:96803200-96813400	Weak transcription	Hela-S3	cervix
17	chr7:96804000-96817200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:96804200-96816000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr7:96804200-96816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:96805000-96814200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:96805400-96819000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:96805800-96813600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:96808800-96813600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:96809000-96813200	Weak transcription	Brain Substantia Nigra	brain
25	chr7:96809400-96817400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:96810000-96818000	Weak transcription	Fetal Muscle Trunk	muscle
27	chr7:96810200-96813000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:96810200-96815200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:96810600-96814000	Weak transcription	HSMMtube	muscle
30	chr7:96810800-96813400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:96811000-96813400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:96811000-96813400	Weak transcription	Fetal Heart	heart
33	chr7:96811000-96814200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:96811200-96813600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr7:96811200-96813600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:96811200-96813600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr7:96811600-96813000	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:96811600-96813200	Strong transcription	Primary T cells from cord blood	blood
39	chr7:96811800-96813200	Strong transcription	K562	blood
40	chr7:96812200-96813000	Strong transcription	GM12878-XiMat	blood
41	chr7:96812200-96814600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:96812200-96815600	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr7:96812200-96815600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:96812400-96813600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr7:96812400-96814000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr7:96812400-96814000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr7:96812400-96814000	Weak transcription	Fetal Intestine Large	intestine
48	chr7:96812400-96814000	Weak transcription	Left Ventricle	heart
49	chr7:96812400-96814200	Weak transcription	HepG2	liver
50	chr7:96812400-96814800	Weak transcription	Primary T cells fromperipheralblood	blood

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