Variant report

Variant	rs73708876
Chromosome Location	chr7:96788615-96788616
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:96784450..96786338-chr7:96788596..96790706,2	K562	blood:
2	chr7:96746484..96749915-chr7:96785838..96788939,4	K562	blood:
3	chr7:96784422..96785964-chr7:96788597..96790246,2	K562	blood:
4	chr7:96779781..96781668-chr7:96787687..96790024,2	K562	blood:

Variant related genes	Relation type
ENSG00000196636	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10265264	0.83[AMR][1000 genomes]
rs56962196	0.83[AMR][1000 genomes]
rs58839243	0.83[AMR][1000 genomes]
rs73708854	0.83[AMR][1000 genomes]
rs73708859	0.83[AMR][1000 genomes]
rs73708861	0.83[AMR][1000 genomes]
rs73708863	0.83[AMR][1000 genomes]
rs73708864	0.82[AFR][1000 genomes]
rs73708865	0.82[AFR][1000 genomes]
rs73708872	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708874	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708875	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708882	1.00[AMR][1000 genomes]
rs73708886	1.00[AMR][1000 genomes]
rs73708890	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96760400-96796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:96768400-96789000	Weak transcription	Aorta	Aorta
3	chr7:96768800-96790400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:96768800-96797800	Weak transcription	Left Ventricle	heart
5	chr7:96769000-96789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:96769000-96790000	Weak transcription	Ovary	ovary
7	chr7:96769000-96799600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr7:96769200-96789800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:96769200-96791200	Weak transcription	Fetal Kidney	kidney
11	chr7:96769400-96793400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:96769600-96788800	Weak transcription	Primary B cells from cord blood	blood
13	chr7:96769600-96789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:96769800-96789000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:96771400-96818200	Weak transcription	A549	lung
16	chr7:96772400-96788800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:96778600-96789200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:96778600-96792600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:96779000-96789000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr7:96779000-96789200	Weak transcription	Lung	lung
21	chr7:96779600-96788800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr7:96780000-96790800	Weak transcription	Fetal Brain Male	brain
23	chr7:96783600-96797000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr7:96783800-96788800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:96783800-96789200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:96785600-96790000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr7:96785600-96796800	Weak transcription	HepG2	liver
28	chr7:96786400-96790400	Strong transcription	Primary hematopoietic stem cells	blood
29	chr7:96786800-96789000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:96787000-96795600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:96787400-96797600	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr7:96787600-96796200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:96787600-96796600	Weak transcription	Esophagus	oesophagus
34	chr7:96788000-96791400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr7:96788200-96791200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr7:96788200-96791200	Weak transcription	Small Intestine	intestine
37	chr7:96788400-96789000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr7:96788400-96789200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
39	chr7:96788400-96789400	Strong transcription	K562	blood
40	chr7:96788400-96789600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:96788400-96790800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
42	chr7:96788400-96791200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
43	chr7:96788600-96789000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr7:96788600-96789400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr7:96788600-96789400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
46	chr7:96788600-96789400	ZNF genes & repeats	Liver	Liver
47	chr7:96788600-96790600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
48	chr7:96788600-96790600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:96788600-96790600	ZNF genes & repeats	Primary T cells from cord blood	blood
50	chr7:96788600-96790600	Strong transcription	Primary T helper cells fromperipheralblood	blood

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