Variant report

Variant	rs73708890
Chromosome Location	chr7:96819081-96819082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10265264	1.00[AMR][1000 genomes]
rs28406061	0.83[AMR][1000 genomes]
rs56032835	0.83[AMR][1000 genomes]
rs56962196	1.00[AMR][1000 genomes]
rs58839243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73708847	0.83[AMR][1000 genomes]
rs73708849	0.83[AMR][1000 genomes]
rs73708852	0.83[AMR][1000 genomes]
rs73708854	1.00[AMR][1000 genomes]
rs73708858	0.83[AMR][1000 genomes]
rs73708859	1.00[AMR][1000 genomes]
rs73708861	1.00[AMR][1000 genomes]
rs73708863	1.00[AMR][1000 genomes]
rs73708864	0.83[AMR][1000 genomes]
rs73708865	0.83[AMR][1000 genomes]
rs73708872	0.83[AMR][1000 genomes]
rs73708874	0.83[AMR][1000 genomes]
rs73708875	0.83[AMR][1000 genomes]
rs73708876	0.83[AMR][1000 genomes]
rs73708882	0.83[AMR][1000 genomes]
rs73708886	0.83[AMR][1000 genomes]
rs73708889	0.83[AMR][1000 genomes]
rs73708893	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96812400-96828800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:96812600-96822200	Weak transcription	Liver	Liver
3	chr7:96812800-96823000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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