Variant report

Variant	rs73708882
Chromosome Location	chr7:96805168-96805169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:96802770..96806214-chr7:96807512..96809959,3	K562	blood:
2	chr7:96767307..96769566-chr7:96804209..96806523,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10265264	0.83[AMR][1000 genomes]
rs56962196	0.83[AMR][1000 genomes]
rs58839243	0.83[AMR][1000 genomes]
rs73708854	0.83[AMR][1000 genomes]
rs73708859	0.83[AMR][1000 genomes]
rs73708861	0.83[AMR][1000 genomes]
rs73708863	0.83[AMR][1000 genomes]
rs73708872	1.00[AMR][1000 genomes]
rs73708874	1.00[AMR][1000 genomes]
rs73708875	1.00[AMR][1000 genomes]
rs73708876	1.00[AMR][1000 genomes]
rs73708886	1.00[AMR][1000 genomes]
rs73708890	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:96771400-96818200	Weak transcription	A549	lung
3	chr7:96789400-96812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:96789400-96815400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:96789600-96805200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr7:96790400-96814600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:96790600-96811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:96790600-96811600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:96790600-96813600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:96790600-96813600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:96791800-96811600	Weak transcription	Adipose Nuclei	Adipose
14	chr7:96796000-96811800	Weak transcription	K562	blood
15	chr7:96797400-96811200	Weak transcription	HepG2	liver
16	chr7:96797400-96814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:96797400-96814800	Weak transcription	Pancreas	Pancrea
18	chr7:96797400-96816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:96797400-96816600	Weak transcription	Aorta	Aorta
20	chr7:96797600-96810800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:96797600-96811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:96797600-96811800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:96797800-96816000	Weak transcription	Primary B cells from cord blood	blood
25	chr7:96798000-96810200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr7:96798000-96811800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:96798200-96810400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr7:96799200-96812200	Weak transcription	GM12878-XiMat	blood
29	chr7:96800800-96812600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:96801200-96811800	Weak transcription	Ovary	ovary
31	chr7:96801200-96815400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:96803000-96818400	Weak transcription	Psoas Muscle	Psoas
33	chr7:96803200-96813400	Weak transcription	Hela-S3	cervix
34	chr7:96803600-96805600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr7:96804000-96817200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr7:96804200-96816000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:96804200-96816200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:96804800-96805400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:96805000-96814200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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